More detailed growth models using inference.
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Apr 24, 2020 - Python
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manuscript-code
Here are 29 public repositories matching this topic...
Dissecting systems serology with a tensor factorization
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Aug 20, 2026 - Python
Study Fc antibody dynamics using a multivalent binding model
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Jun 30, 2024 - Julia
A binding-reaction model for the common gamma chain receptor cytokines.
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Apr 1, 2021 - Python
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Jun 30, 2024 - Jupyter Notebook
This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.
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Aug 20, 2026 - Jupyter Notebook
A Multivalent Binding Model for FcgRs
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Jan 8, 2020 - Python
一个出图+组图skill，附带一整套svg工具
svg science r grid matplotlib plot-library manuscript svg-images plot-graph svg-editor plot-charts matplotlib-python cowplot plot-generator agentic-workflow agent-skills agent-skill manuscript-code
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Sep 22, 2026 - Rust
The structure is the message: preserving experimental context through tensor decomposition
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Jul 12, 2024 - Jupyter Notebook
Trafficking model of FcRn to explain the effects of failed release at the cell surface.
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Jun 30, 2024 - R
Clusters phosphoproteomics data by sequence and abundance dynamics
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Sep 13, 2026 - Python
R code to model and visualize sweat sodium loss across temperature and humidity conditions for passive vs. active interventions.
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Aug 11, 2026 - R
Inferring antibody species from systems serology with a mechanistic binding model.
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Apr 13, 2025 - Python
R package for “Model-Robust Standardization in Cluster-Randomized Trials” by Fan Li, Jiaqi Tong, Xi Fang, Chao Cheng, Brennan C. Kahan, and Bingkai Wang. Statistics in Medicine (2025), 44(20–22):e70270.
r standardization r-package causal-inference research-software cluster-randomized-trials manuscript-code
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Sep 30, 2026 - R
R package for “Semiparametric Principal Stratification Analysis Beyond Monotonicity” by Jiaqi Tong, Brennan Kahan, Michael O. Harhay, and Fan Li. Statistica Sinica, in press.
r r-package sensitivity-analysis causal-inference research-software principal-stratification debiased-machine-learning manuscript-code doubly-robust-estimation
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Sep 30, 2026 - R
R code for “Hierarchical Bayesian modeling of heterogeneous outcome variance in cluster randomized trials” by Guangyu Tong, Jiaqi Tong, Yi Jiang, Denise Esserman, Michael O. Harhay, and Joshua L. Warren. Clinical Trials (2024), 21(4):451–460.
r clinical-trials jags bayesian-statistics hierarchical-models research-software cluster-randomized-trials manuscript-code variance-modeling
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Sep 29, 2026 - R
A modeling perspective on cell selective ligands
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Apr 13, 2025 - Python
Reproducible analysis for between-visit cerebrovascular and cardiovascular responses during the cold pressor test
r reproducibility cerebrovascular cardiovascular-physiology manuscript-code transcranial-doppler cold-pressor-test
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Sep 3, 2026 - R
R code for designing multicenter individually randomized group treatment trials, including sample size calculations, simulations, and examples. Companion to Tong, Tong, and Li (Biometrical Journal, 2024).
r clinical-trials sample-size power-analysis research-software trial-design manuscript-code multicenter-trials irgt
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Sep 30, 2026 - R
R code for sample size calculations and random slope simulations in hierarchical 2 × 2 factorial trials with treatment effect heterogeneity. Companion to Tong, Li, and Tong (Biometrical Journal, 2026).
r clinical-trials sample-size hierarchical-models power-analysis research-software factorial-design treatment-effect-heterogeneity manuscript-code
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Sep 30, 2026 - R
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