Correct pileup record state and count accounting - #656

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SuhasSrinivasan wants to merge 8 commits into

nanoporetech:masterfrom

SuhasSrinivasan:codex/normalize-duplicate-pileup-modified-bases

Commits on Aug 5, 2026

Count all combined cytosine calls
SuhasSrinivasan
committed
ae25fa7
Allow overlapping optimized motif masks
SuhasSrinivasan
committed
9f321e1
Fix compact dynamic combine slots
SuhasSrinivasan
committed
e9646c9
Key dynamic modification slots by base and code
SuhasSrinivasan
committed
7c20fb5
Harden dynamic pileup slot tests
SuhasSrinivasan
committed
9b5e93c
Align dynamic reverse pileup status counts
SuhasSrinivasan
committed
2ca7b1f
Normalize duplicate pileup modification selections
SuhasSrinivasan
committed
b060d18

Commits on Aug 11, 2026

Clear generic pileup state between records
SuhasSrinivasan
committed
18b3ff2