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Pull requests: nanoporetech/modkit

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Pull requests list

Handle CRAM references, empty thresholds, and zero-target extract inputs
#713 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
3
Correct entropy state, motif ownership, and regional statistics
#712 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
Correct repair matching, ordering, and atomic output
#711 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
Preserve independent MM-group calls and support larger code sets
#709 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
5 tasks done
Make modification-code ordering traits consistent
#707 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Prevent interval endpoint overflow and remove stray adjust-mods stderr output
#706 opened Aug 10, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Make indexed sampling and threshold caps deterministic
#705 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
2
Correct DMR site statistics and segmentation completeness
#704 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
Correct pileup motif ownership, validation, and mask limits
#702 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
5 tasks done
Propagate probability sampling failures
#701 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Correct Localize coordinates, coverage, validation, and charts
#700 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
Correct Summary population and deterministic reporting
#699 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
Correct extract motif metadata and output accounting
#698 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Propagate text and DMR output failures
#697 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Apply edge filters consistently during probability sampling
#696 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Pin hts-sys to bindings compatible with rust-htslib 0.46
#666 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Validate bedMethyl merge inputs and preserve row identities
#664 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Map bedMethyl intervals and strands into genomic space
#662 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Correct validate truth parsing and observation accounting
#659 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
Correct pileup record state and count accounting
#656 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
6 tasks done
Allow N
#597 opened Mar 19, 2026 by killercup Contributor Loading…
4
Reservoir sampling for high-depth pileup
#588 opened Feb 28, 2026 by stein-andrew Loading…
1
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