Section 15.9: Ridgeline Plot for Expression Distribution of GSEA Result has little information. Plot's x-axis has no title. What are the units? Should discuss advantages and disadvantages of changing core_enrichment from TRUE to FALSE.
Similarly, simplify is introduced in Section 17.4.3: Reduce Redundancy of Enriched GO Terms
measure: Method to measure similarity.
But what are valid options? Should be like measure = c("m1", "m2", "m3") and in function measure <- match.arg(measure). Also, there is no explanation of what "Wang" means mathematically. Refernces section links to old GitHub issues.
Section 15.9: Ridgeline Plot for Expression Distribution of GSEA Result has little information. Plot's x-axis has no title. What are the units? Should discuss advantages and disadvantages of changing
core_enrichmentfromTRUEtoFALSE.Similarly,
simplifyis introduced in Section 17.4.3: Reduce Redundancy of Enriched GO TermsBut what are valid options? Should be like
measure = c("m1", "m2", "m3")and in functionmeasure <- match.arg(measure). Also, there is no explanation of what"Wang"means mathematically. Refernces section links to old GitHub issues.