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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

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The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    πŸŽ„Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    πŸ€– A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 141 repositories
  • biomedical-knowledge-mining-book Public

    πŸ“– Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 96 30 0 0 Updated Sep 28, 2026
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes's past year of commit activity
    R 13 4 0 0 Updated Sep 28, 2026
  • ivolcano Public

    Interactive Volcano Plot

    YuLab-SMU/ivolcano's past year of commit activity
    R 7 2 0 0 Updated Sep 28, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io's past year of commit activity
    HTML 14 6 0 0 Updated Sep 28, 2026
  • ggimage Public

    🎨 Use Images in ggplot2

    YuLab-SMU/ggimage's past year of commit activity
    R 179 36 5 0 Updated Sep 27, 2026
  • treedata-book-2ed Public

    πŸ“– Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed's past year of commit activity
    HTML 0 1 0 0 Updated Sep 27, 2026
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot's past year of commit activity
    R 260 75 67 0 Updated Sep 27, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE's past year of commit activity
    R 125 34 16 0 Updated Sep 26, 2026
  • gson Public

    Base Class and Methods for 'gson' Format

    YuLab-SMU/gson's past year of commit activity
    R 3 4 0 0 Updated Sep 26, 2026
  • GOSemSim Public

    β›³ GO-terms Semantic Similarity Measures

    YuLab-SMU/GOSemSim's past year of commit activity
    R 74 24 4 0 Updated Sep 26, 2026