Hi, I have my own GO annotation data with multiple treatment groups for comparison, and so I did the comparecluster with 'enricher' function. I would like to visualize the result in cnetplot with gene name. Do you know how to change the gene ID into the gene name in this case? I tried the 'setReadable' function but it was not working since my microorganism is not from the Org database.
f=compareCluster(GeneID~group+treatment, data = big_df, fun="enricher", TERM2GENE = go_gene, TERM2NAME = go_terms, pvalueCutoff = 0.05, pAdjustMethod = "BH")
Thank you! :)
Hi, I have my own GO annotation data with multiple treatment groups for comparison, and so I did the comparecluster with 'enricher' function. I would like to visualize the result in cnetplot with gene name. Do you know how to change the gene ID into the gene name in this case? I tried the 'setReadable' function but it was not working since my microorganism is not from the Org database.
f=compareCluster(GeneID~group+treatment, data = big_df, fun="enricher", TERM2GENE = go_gene, TERM2NAME = go_terms, pvalueCutoff = 0.05, pAdjustMethod = "BH")
Thank you! :)