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xr-ds-seq-snakemake
xr-ds-seq-snakemake PublicThis repository contains xr-seq and damage-seq pipelines.
Python 4
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Analysis code for RNAPII, nucleotide excision repair, and 3D genome dynamics after UV damage
CompGenomeLab/ggner-3d’s past year of commit activity - ner_rnapii_3d Public
1D loop-extrusion simulation engine modeling RNAPII transcription, DNA lesions, CTCF boundaries, and repair dynamics
CompGenomeLab/ner_rnapii_3d’s past year of commit activity - uv-3d-ddr Public
Genome architecture analysis, dataset generation, and GNN training/inference from the study 'UV-induced reorganization of 3D genome mediates DNA damage response'.
CompGenomeLab/uv-3d-ddr’s past year of commit activity - quiz-pool Public
CompGenomeLab/quiz-pool’s past year of commit activity - GPCRevolution Public
CompGenomeLab/GPCRevolution’s past year of commit activity - GPCR_Family_Divergence Public
CompGenomeLab/GPCR_Family_Divergence’s past year of commit activity - XR-DS-seq-Tutorial Public
GitHub repository tutorial for XR-Seq and Damage-Seq methodologies, providing code examples, datasets, and documentation for studying DNA damage and repair processes.
CompGenomeLab/XR-DS-seq-Tutorial’s past year of commit activity
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