workflow-documentation

Python tool that generates interactive HTML checklists from YAML templates. Jinja conditionals, reusable includes, pluggable modules, built-in web server. Ideal for SOPs, deployments & recurring ops.

A transparent ONT bacterial assembly case study for an *Acinetobacter* barcode07 isolate, built not only to generate an assembly, but to show how raw reads become an interpretable genome through QC evidence, assembler comparison, graph checks, phylogeny, annotation, documented decisions, and honest limitations.

ℹ️🚧️🌊️ Information about Git workflows usage in seanpm2001 projects. See also: seanpm2001:GitHub-actions

ℹ️🚧️🌊️:octocat: Information about GitHub actions usage in seanpm2001 projects. See also: seanpm2001:Workflows

Automated process documentation: Playwright + Gemini agent records workflows in the browser and generates step-by-step docs with screenshots. POC for onboarding and knowledge bases.

A reproducible modern re-analysis of the O67940_AQUAE protein-function case study, rebuilding the evidence chain behind annotation transfer with current databases, AlphaFold, structural comparison, residue mapping, provenance tracking, and explicit limits on what the computational workflow can and cannot prove.

SOP cleanup service with a public work sample and browser-based Markdown builder

Private-by-design browser tool for drafting controlled SOPs and exporting Markdown

Architectural workflow and prompt engineering documentation for an AI-powered calendar management assistant built with Python and LLMs.

Practical Markdown SOP and field checklist templates for small-team operations