nextclade

Here are 9 public repositories matching this topic...

Reference-based consensus creation

A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.

snakemake phylogenetics nextstrain virus-evolution nextclade

KDHE Influenza A pipeline, built to take MinIon fastq files and produce clade analysis

bioinformatics-pipeline irma minion influenza kansas nextclade

This is the pipeline that handles SARS-CoV-2 samples from the health sector in Region Midtjylland (Illumina PE)

Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

pangolin artic covid-19 sars-cov-2 nextclade

A template for building a custom Enterovirus Nextclade dataset

template nextclade enterovirus

nextclade enterovirus cva16

Snakemake pipeline for creating a Nextclade dataset for Enterovirus D68

nextclade enterovirus ev-d68

To associate your repository with the nextclade topic, visit your repo's landing page and select "manage topics."