Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

🧪 Ultrafast bisulfite

🧪 Pipeline for detecting Ψ modification

Analyse RNA feature distributions.

Base-conversion Sequencing Aligner

🧪 Optimized protocol for m6A-SAC-seq

Magnipore: Differential single nucleotide changes of ONT signals

Metagene Profiling Analysis and Visualization

Online version of tool is live

High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation

NanoSpeech: a custom modification-aware basecaller

CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.

NanoListener: a small suite of Python scripts to create custom training datasets for modification-aware basecaller models.

Repository for the R package RNAModR

handful of tools that might be needed before or after HAMR

Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

EpiRNA-Scanner, a publicly deployed web framework that processes sequences from 41 bases to over 100,000 bases without manual preprocessing. The system introduces Epitranscriptomic Boundary Contrast Scoring (EBCS), producing single-nucleotide resolution predictions anchored to degenerate DRACH motifs.

High-throughput Workflow for Processing and Analyzing RNA-Seq Data

Guide for the Baccarelli Lab GitHub