GitHub repository for the Biodiversity Bioinformatics Summer School
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Updated
Aug 6, 2026 - Shell
GitHub repository for the Biodiversity Bioinformatics Summer School
TuttiFrutti is a collection of R functions and R scripts for various utilities and tools with a focus on animal breeding and genomics.
UAI-TREM: Unravelling Additive and Indirect genetic effects with Time-dependent Random Effect Models. An R engine for genetic evaluation by AI-REML and Gibbs: breeding values, single-step genomics (ssGBLUP, APY), reaction norms and multi-trait models, in C++ with no run-time dependency.
Sheep genetic evaluation CLI & MCP server -- search animals, compare EBVs, plan matings, rank flocks via the NSIP database
Code for IN-DEPTH
Standardized, open-source R package to validate (genomic) predictions in animal breeding.
Metatranscriptomica: interacao EBV e H. pylori em cancer gastrico
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