Integration tests and reference examples for all external scientific data vendors used by Cyto.
This project implements a distributed streaming pipeline for multi-omics breast cancer data analysis, integrating TCGA, CPTAC genomics and proteomics data for real time processing with Apache Kafka and multi-omics integration for comprehensive cancer analysis
Integrative clinical breast cancer proteomics project using CPTAC, TCGA, and GSE176078 to characterize TNBC-associated protein changes and validate candidate biomarkers.
Data transformation and integration service between CPTAC BCR and CDR.
Spearman correlation and Random Forest analysis of RNA-protein coupling on CPTAC-BRCA multi-omics data, quantifying how copy-number adds predictive signal beyond mRNA.
A reproducible multi-omics bioinformatics workflow for investigating extracellular matrix-associated molecular signatures in pancreatic ductal adenocarcinoma.
End-to-end bulk RNA-seq differential expression pipeline for breast cancer using real public transcriptomics data, automated GDC download, QC, statistical testing, and visualisation.
Personal profile repository for Vladimir Mitev, Founder and CEO of Helena Bioinformatics.
Reproducible analysis release for developmental regulons in endometrial carcinoma.
Multi Omics in R & Python (QBIO 490)
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