High-accuracy ML model for leukemic stem cell (LSC) identification from single-cell multi-omics data (TEA‑seq, CITE‑seq, scRNA‑seq).
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Jan 11, 2026 - Jupyter Notebook
#
celltypist
Here are 6 public repositories matching this topic...
Reproducible benchmark of four scRNA-seq cell type annotation methods (SingleR, CellTypist, ACTINN, scANVI) on PBMC3K
benchmark bioinformatics scrna-seq bioinformatics-analysis scrna-seq-data single-cell-rna-seq single-cell-analysis scrna-seq-analysis single-cell-sequencing pbmc singler actinn scvi-tools pbmc3k celltypist
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Aug 7, 2026 - Jupyter Notebook
End-to-end single-cell RNA-seq pipeline with scVI, Scanpy, and CellTypist for QC, clustering, annotation, and differential expression.
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Feb 14, 2026 - Jupyter Notebook
Single-Cell Atlas Builder is a modular platform for processing, integrating, and visualizing single-cell RNA-seq datasets. It combines FastAPI, Scanpy, and CellTypist for efficient analysis, with optional LLM-powered summaries for cluster and pathway interpretation.
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Nov 17, 2025 - Python
LangGraph-orchestrated agentic pipeline for scRNA-seq analysis with LLM-guided QC, clustering, and cell type annotation
python docker bioinformatics scrna-seq single-cell-rna-seq scanpy llm anthropic langgraph agentic-ai celltypist
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Jun 13, 2026 - Python
A hands-on single-cell RNA-seq bone marrow project focused on learning the full reasoning chain: how raw expression matrices become QC-filtered cells, clusters, immune-cell annotations, marker evidence, pathway scores, and biologically interpretable results.
python bioinformatics computational-biology immunology pathway-analysis differential-expression umap conda-environment scanpy bone-marrow anndata cell-type-annotation leiden-algorithm decoupler single-cell-rna-sequencing-analysis immune-landscape celltypist
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Dec 7, 2025 - Jupyter Notebook
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