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Welcome to the 2018_ASM_Workshop wiki!

This wiki contains a collection of information and links that will assist you in the completion of the 2018 ASM Workshop "Microbiome Analysis Using R".

Individual topics can be accessed using the list to the right.

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Schedule

• 8:00 - 8:15: Course Intro and Installation

• 8:15 - 8:30: Introduction to R and RStudio

• 8:30 - 9:30: ggplot2

• 9:30 - 10:00: R details and working with tables

• 10:00 - 11:00: Introduction to Phyloseq

• 11:00 - 12:00: Introduction to the Workshop Case Study: Antibiotic Treated Mice

• 12:00 - 1:00: Lunch Break

• 1:00 - 3:00: Working through the Case Study in R

• 3:00 - 4:00: Wrap-up and Additional Examples and Discussion

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Useful links:

• RStudio Learning: https://www.rstudio.com/online-learning/
• R for Data Science: https://github.com/hadley/r4ds
• ggplot2: http://ggplot2.tidyverse.org
• Phyloseq GitHub page: https://joey711.github.io/phyloseq/
• dada2 GitHub page: https://benjjneb.github.io/dada2/