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Fix four behaviour changes introduced by the mypy adoption in #411
- #418
#418
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LucaMarconato
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scverse/spatialdata-io:fix/pr-411-regressions
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Sep 9, 2026
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Fix four behaviour changes introduced by the mypy adoption in #411
#418
LucaMarconato
merged 14 commits into
main
scverse/spatialdata-io:main
from
fix/pr-411-regressions
scverse/spatialdata-io:fix/pr-411-regressions
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Commits on Sep 9, 2026
fix(merscope): fall back to dask_image when rioxarray cannot be imported
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fix(dbit): do not fall back to the current working directory
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fix(macsima): skip files whose OME metadata cannot be parsed, round positions
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test(visium): cover the reader with the CytAssist breast cancer dataset
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docs: changelog entries for the #411 regression fixes
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docs(visium): replace the invented 10x attribution links
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fix visium dataset download for tests
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fix dataset name test_visium.py
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docs: drop the changelog entries for the #411 regressions
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test(visium): cover the reader end to end instead of only the regression
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revert(macsima): keep truncating the OME plane positions
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test(macsima): assert the skip warning names the unreadable file
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build: exclude the downloaded test data from mypy
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better docstring test dbit
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