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deps: update monai requirement from >=1.3 to >=1.6.1 - #147

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Oct 14, 2026
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deps: update monai requirement from >=1.3 to >=1.6.1#147
mcencini merged 1 commit into
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dependabot/pip/main/monai-gte-1.6.1

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Updates the requirements on monai to permit the latest version.

Release notes

Sourced from monai's releases.

MONAI 1.6.1

What's Changed

... (truncated)

Changelog

Sourced from monai's changelog.

[1.6.1] - 2026-09-25

Added

  • NaViT (monai.networks.nets.NaViT): Native Resolution Vision Transformer with Patch n' Pack, supporting variable-resolution 2D and 3D inputs. Implements factorized positional embeddings, token dropout, attention pooling, and QK normalization, based on "Patch n' Pack: NaViT, a Vision Transformer for any Aspect Ratio and Resolution".
  • HyenaMixer, HyenaTransformerBlock, and DepthwiseFFTConv{2,3}d in monai.networks.blocks: subquadratic O(N log N) alternatives to windowed self-attention, backed by the HyenaND operator from the optional nvsubquadratic package.
  • HyenaNDUNETR (monai.networks.nets.HyenaNDUNETR): thin SwinUNETR subclass with a get_variant(name) classmethod for the three Hyena variants (HHHH, HAHA, HHAA) from the NeurIPS 2026 paper "Native Multi-Dimensional Subquadratic Operators via Input Dependent Long Convolutions" (paper id 26539).
  • SwinUNETR.use_hyena and SwinUNETR.hyena_stages kwargs to thread HyenaND blocks through any subset of Swin stages. Default use_hyena=False preserves bit-identical forward behavior of the existing code path.
  • New [hyena] extra added to optional dependencies, use this to install nvsubquadratic and other packages.
  • Add GPU-accelerated Dicom image decoding through the added NvImgCodecPydicomReader reader class. Use the [nvimgcodec] extra to install CUDA 13 dependencies.
  • Add explicit spatial_ndim tracking to MetaTensor (#8765)
  • Enabling MetaTensor Persistent Caching (#8940)
  • Add AbsoluteVolumeDifferenceMetric to monai.metrics (#8945)
  • Add BoundaryLoss (#8916)
  • SwinUNETR: optional flash attention (scaled_dot_product_attention) in WindowAttention (#8977)
  • Ignore_index support across dice and other losses (#8757)
  • Affine-aware landmark heatmap generation (#8957)

Security Fixes

  • Fix GHSA-873f-pvrv-4x83: warn before executing a bundle's config in load()/run() (#9057)
  • Safe eval (#8936)
  • fix(safeeval): evaluate rewritten AST instead of original string (#9063)
  • Fix GHSA-x6pr-233j-x5cw: warn before executing an FL-provisioned bundle config (#9078)
  • Update CodeQL Action (#9079)
  • Harden download/deserialize integrity (weights_only, hash checks, path confinement) (#9088)
  • Harden nnUNetV2Runner against code execution (#9086)
  • Actions Permission and Other CodeQL Fixes (#9098)
  • fix: confine nnUNet postprocessing pickle loads to the results directory (GHSA-8f32) (#9113)
  • fix: screen logging.conf class=/args= before fileConfig (GHSA-wvpx) (#9114)
  • fix: restrict algo_from_json target to Algo subclasses (GHSA-2wx3) (#9115)
  • Validate downloaded file integrity and raise ValueError on hash mismatch (#8833)
  • Warn before instantiating target from algo_object.json (#9085)

CI/Testing Fixes

  • ci: mute dynamic warningregistry logs noise in pytest suite (#8893)
  • tests: remove more duplicate test cases (#8943)
  • Enable macOS Install Test Only (#8976)
  • feat: replace mypy and pytype with pyrefly for static type analysis (#8868)
  • Modernising Build Process (#9010)
  • Weekly Preview Fix (#9075)
  • Precommit Autofixing (#9061)
  • Fixing Git Dependency Weekly Build Issue (#9081)
  • Check Environment Script (#9038)
  • ci: add local pre-commit DCO hook and setup command (#9094)
  • Declare ruff's vendored-file excludes once in pyproject.toml (#9090)
  • Route runtests.sh ruff invocations through PY_EXE (#9089)
  • tests: remove the temporary directory make_nifti_image creates (#9042)

Other Fixes

  • Add docstring note that Transpose/Transposed do not update the affine matrix (#8888)
  • Fix nnUNet test directory leakage into current working directory (#8887)
  • tests: remove duplicate and dead test cases (#8896)

... (truncated)

Commits
  • f2ec87a Release 1.6.1 Docs Updates (#9120)
  • fffb113 Add Tool-Assisted Contribution Policy (#9106)
  • 40e4fc9 fix: restrict algo_from_json target to Algo subclasses (GHSA-2wx3) (#9115)
  • db6f171 fix: screen logging.conf class=/args= before fileConfig (GHSA-wvpx) (#9114)
  • c7d17d7 Improve/writer error messages (#8753)
  • 0857620 fix: confine nnUNet postprocessing pickle loads to the results directory (GHS...
  • 4291019 Report a missing nnunetv2 as an optional dependency in nnUNetV2Runner (#9054)
  • 31e3768 Adding MedNeXt to documentation (#9074)
  • ad5a203 tests: remove the temporary directory make_nifti_image creates (#9042)
  • 46de3c0 Add GPU-accelerated dcm image decoding (#8954)
  • Additional commits viewable in compare view

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@dependabot
deps: update monai requirement from >=1.3 to >=1.6.1
8a5fe0c 
Updates the requirements on [monai](https://github.com/Project-MONAI/MONAI) to permit the latest version.
- [Release notes](https://github.com/Project-MONAI/MONAI/releases)
- [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md)
- [Commits](Project-MONAI/MONAI@1.3.0...1.6.1)

---
updated-dependencies:
- dependency-name: monai
  dependency-version: 1.6.1
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
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✅ All modified and coverable lines are covered by tests.

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@mcencini
mcencini merged commit 759e3e6 into main Oct 14, 2026
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@dependabot
dependabot Bot deleted the dependabot/pip/main/monai-gte-1.6.1 branch October 14, 2026 05:13
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