Issues

• Genes to Transcripts does not link out to Ensembl

  openvar/variantValidator#887 · Filter by author leicray opened on Oct 6, 2026
  1

• LOVD endpoint returning p.(Met1?) for a variant close to the stop codon

  openvar/variantValidator#886 · Filter by author ifokkema opened on Sep 24, 2026
  2

• Display the submitted variant in web interface output

  openvar/variantValidator#885 · Filter by author leicray opened on Sep 7, 2026
  1

• remove pending status of LRG warnings

  openvar/variantValidator#884 · Filter by author Peter-J-Freeman opened on Sep 2, 2026
  2

• Processing error and empty mappings on the LOVD endpoint for NC_000011.9:g.111742146del

  openvar/variantValidator#881 · Filter by author ifokkema opened on Aug 3, 2026
  2

• Concept - Select caches in vvMixinInit

  openvar/variantValidator#876 · Filter by author Peter-J-Freeman opened on Jul 31, 2026
  2

• De-duplicate near redundant functions

  openvar/variantValidator#872 · Filter by author John-F-Wagstaff opened on Jul 30, 2026
  3

• Perf improvement to liftover

  openvar/variantValidator#871 · Filter by author John-F-Wagstaff opened on Jul 30, 2026
  2

• Documentation review

  openvar/variantValidator#866 · Filter by author Peter-J-Freeman opened on Jul 17, 2026
  1

• Performance improvements planning

  openvar/variantValidator#864 · Filter by author John-F-Wagstaff opened on Jul 16, 2026
  6

• Fix vvHGVS RNA parser

  openvar/variantValidator#856 · Filter by author Peter-J-Freeman opened on Jul 6, 2026
  16

• Consider merging VF into the VV Repo and updating the pyproject.toml to install both packages

  openvar/variantValidator#841 · Filter by author Peter-J-Freeman opened on Jun 24, 2026
  10

• Reduction of technical debt in Validator

  openvar/variantValidator#835 · Filter by author John-F-Wagstaff opened on Jun 15, 2026
  2

• Empty primary_assembly_loci but filled alt_genomic_loci for "NC_000024.9:g.9197998C>T".

  openvar/variantValidator#834 · Filter by author ifokkema opened on Jun 12, 2026
  18

• Get liftover data for CNVs

  openvar/variantValidator#832 · Filter by author ifokkema opened on Jun 11, 2026

• Accurate reporting of so-called genomic transcripts so NC(NM) vs NM discrepancies produce warnings.

  openvar/variantValidator#827 · Filter by author Peter-J-Freeman opened on Jun 8, 2026
  9

• Some impossible mappings

  openvar/variantValidator#810 · Filter by author ifokkema opened on Apr 29, 2026
  16

• dbSNP output and input into VariantValidator

  openvar/variantValidator#794 · Filter by author Peter-J-Freeman opened on Mar 18, 2026
  12

• Schema for Lit Search AI search terms

  openvar/variantValidator#793 · Filter by author Peter-J-Freeman opened on Mar 18, 2026

• Feature request: Support cdot as an alternative transcript data provider (replacing VVTA/PostgreSQL) with SQLite for file-only deployment

  openvar/variantValidator#789 · Filter by author timothyjlaurent opened on Mar 6, 2026
  1

• Odd errors surrounding regions of NC/NM sequence differences

  openvar/variantValidator#786 · Filter by author ifokkema opened on Mar 4, 2026
  20

• Transcript NR_19979.1 not present in VV

  openvar/variantValidator#785 · Filter by author corbin-chris opened on Feb 27, 2026
  8

• Error in the ref base does not trigger a validation error for an intronic variant

  openvar/variantValidator#767 · Filter by author ielis opened on Dec 9, 2025
  21

• Invalid transcript returned for TMEM247 gene by gene2trans

  openvar/variantValidator#765 · Filter by author leicray opened on Dec 2, 2025
  2

• Genes to Transcripts misleading error messages

  openvar/variantValidator#753 · Filter by author leicray opened on Sep 29, 2025
  4