All pull requests

Pull requests

• refractor: add nf-schema comment to the plugin import and sample sheet channel generation

  #4497·rarestpreet opened Oct 6, 2026·2 of 4 tasks·

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• Add a pre-commit hook that disallows the .view() operator

  #4496·prototaxites opened Oct 5, 2026Contributor·4 tasks·

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  6

• Skip files_unchanged lint when no author names are found in the manifest

  #4495·srikarjy opened Oct 3, 2026·3 of 4 tasks·

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• fix(lint): respect ignore_configs for multiqc_config's export_plots check

  #4492·jtremblay opened Oct 2, 2026·1 of 4 tasks·

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  6

• Skip included names that are not installed components when recreating installed_by

  #4491·pinin4fjords opened Oct 2, 2026Member·4 tasks done·

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  7

• Don't block workflow.onComplete on the MultiQC report

  #4486·robsyme opened Sep 30, 2026Contributor·2 of 4 tasks·

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  1

• switch to nf-core/action for fix_linting and rename it to fix-linting

  #4485·mashehu opened Sep 30, 2026Contributor·

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  · 4.2.0
  1

• Bugfix: import rich.prompt module in singularity container download.

  #4483·MatthiasZepper opened Sep 29, 2026Member·1 task done·

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  1

• Only run subsequent steps if branch-deploy.outputs.continue is true

  #4480·kevinbackhouse opened Sep 24, 2026Contributor·4 tasks·

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  1

• Template: add metro-map workflow diagram feature

  #4478·ewels opened Sep 21, 2026Member·4 of 5 tasks·

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  · 4.3.0
  3

• Preserve hand-written entries when regenerating container configs

  #4476·pinin4fjords opened Sep 21, 2026Member·5 tasks done·

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  1

• Add docs_pages lint test

  #4475·erikrikarddaniel opened Sep 19, 2026Member·4 tasks done·

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  · 4.3.0
  1

• fix: validate manifest.name format when loading pipeline config

  #4470·kokhlo opened Sep 15, 2026·

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  1

  7

• Signal EDAM load failure and widen the extension map

  #4469·TilakSharma07 opened Sep 11, 2026·

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  1

  1

• fix: guard against empty pipeline name in files_exist lint

  #4466·abhi-0203 opened Sep 7, 2026·

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  1

• modules bump-versions: match nf-core container formatting in main.nf

  #4459·asharaali opened Aug 31, 2026·

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  1

• Round-trip ci: block in .nf-core.yml

  WIP
  #4453·ewels opened Aug 24, 2026Member·3 of 4 tasks·

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  1

• Point Renovate at the public org preset

  #4451·edmundmiller opened Aug 20, 2026Contributor·

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  1

• Fix/4447 linting supressed

  #4450·JulianFlesch opened Aug 20, 2026Contributor·4 tasks·

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  4

  

• Remove ext.use_gpu remnants (superseded by task.accelerator)

  #4445·mahesh-panchal opened Aug 17, 2026Member·

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  3

• Add support to Apple container in tools

  #4444·mribeirodantas opened Aug 16, 2026Member·3 of 4 tasks·

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  36

  

• Fix the always-empty Nextflow version in the CodSpeed workflow

  #4442·FelixKrueger opened Aug 12, 2026·

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  2

• Accept a bare pull_request: in the nf-test workflow trigger

  #4441·FelixKrueger opened Aug 11, 2026·

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  1

• Bump cryptography from 49.0.0 to 50.0.0

  dependenciespython:uv
  #4439·dependabot[bot] opened Aug 5, 2026Bot·

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• Update mcr.microsoft.com/devcontainers/miniconda Docker digest to 26f4e9d

  #4438·renovate[bot] opened Aug 2, 2026Bot·1 task·

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