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bump ngs-bits - #13107

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matthdsm merged 4 commits into
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bump/ngs-bits
Oct 8, 2026
Merged

matthdsm merged 4 commits into
masterfrom
bump/ngs-bits

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@matthdsm

@matthdsm matthdsm commented Oct 8, 2026

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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@matthdsm
matthdsm requested a review from nvnieuwk October 8, 2026 11:16
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github-actions Bot commented Oct 8, 2026

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This PR exceeds the recommended size of 1000 lines. Please make sure you are NOT addressing multiple issues with one PR. Note this PR might be rejected due to its size.

Comment thread modules/nf-core/ngsbits/bedannotategc/tests/main.nf.test.snap Outdated
Comment thread modules/nf-core/ngsbits/rohhunter/main.nf Outdated
@matthdsm
matthdsm added this pull request to the merge queue Oct 8, 2026
Merged via the queue into master with commit 3388c6a Oct 8, 2026
54 checks passed
@matthdsm
matthdsm deleted the bump/ngs-bits branch October 8, 2026 11:48
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3 participants