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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 138

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 172

Repositories

Showing 10 of 105 repositories
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org's past year of commit activity
    JavaScript 96 AGPL-3.0 57 71 14 Updated Oct 17, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.

    nextstrain/bioconda-recipes's past year of commit activity
    Shell 0 4,179 3 0 Updated Oct 16, 2026
  • ncov Public

    Nextstrain build for SARS-CoV-2

    nextstrain/ncov's past year of commit activity
    Python 1,363 MIT 408 70 19 Updated Oct 16, 2026
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 138 230 (1 issue needs help) 41 Updated Oct 15, 2026
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base's past year of commit activity
    Shell 12 8 7 2 Updated Oct 15, 2026
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base's past year of commit activity
    Shell 1 1 4 2 Updated Oct 15, 2026
  • auspice.us Public
    nextstrain/auspice.us's past year of commit activity
    JavaScript 13 8 4 0 Updated Oct 15, 2026
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice's past year of commit activity
    JavaScript 312 AGPL-3.0 172 245 (4 issues need help) 42 Updated Oct 15, 2026
  • infra Public

    Nextstrain shared infrastructure

    nextstrain/infra's past year of commit activity
    Makefile 0 0 2 1 Updated Oct 15, 2026
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli's past year of commit activity
    Python 28 MIT 20 71 4 Updated Oct 15, 2026
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