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feat: Add condition_key support, root API exports, and plotting improvements - #540

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aarmey merged 1 commit into
mainfrom
feat/api-usability-and-plotting
Sep 4, 2026
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feat: Add condition_key support, root API exports, and plotting improvements#540
aarmey merged 1 commit into
mainfrom
feat/api-usability-and-plotting

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@aarmey

@aarmey aarmey commented Sep 4, 2026

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Summary of changes

  • Export bicv, prepare_dataset, plotting, and version at root scrise namespace
  • Add condition_key parameter and adata alias to pf2() and bicv() for automatic condition index generation
  • Generalize ThomsonNorm to control_pattern / control_conditions in plot_condition_factors
  • Remove scanpy dependency in stability.py in favor of numpy sampling
  • Guard against zero genes passing weight filter in plot_gene_factors
  • Add unit tests for all new features and verify >85% test coverage

@aarmey
aarmey merged commit 33c8d6f into main Sep 4, 2026
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@aarmey
aarmey deleted the feat/api-usability-and-plotting branch September 4, 2026 19:06
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