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chore: Fix makefile coverage/typecheck targets and lint common.py #537

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Merged
aarmey merged 1 commit into from
Sep 4, 2026
Merged

chore: Fix makefile coverage/typecheck targets and lint common.py #537

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17 changes: 8 additions & 9 deletions analysis/figures/common.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,25 +8,24 @@
import warnings
from string import ascii_letters

import hdf5plugin # noqa: F401
import matplotlib
import seaborn as sns
from matplotlib import gridspec
from matplotlib import pyplot as plt
from matplotlib.figure import Figure

warnings.filterwarnings("ignore", category=FutureWarning)
warnings.filterwarnings("ignore", category=UserWarning)
warnings.filterwarnings("ignore", category=DeprecationWarning)
warnings.filterwarnings("ignore", message=".*OldFormatWarning.*")

os.environ["PARAFAC2_BACKEND"] = "cupy"
try:
import cupy
import cupy.cuda.compiler
import cupy # noqa: F401
except ImportError:
pass

import hdf5plugin # noqa: F401
import matplotlib
import seaborn as sns
from matplotlib import gridspec
from matplotlib import pyplot as plt
from matplotlib.figure import Figure

matplotlib.use("AGG")

matplotlib.rcParams["legend.labelspacing"] = 0.2
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4 changes: 2 additions & 2 deletions makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -22,12 +22,12 @@ test: .venv
uv sync

coverage.xml: .venv
uv run pytest --junitxml=junit.xml --cov=RISE --cov-report xml:coverage.xml
uv run pytest --junitxml=junit.xml --cov=scrise --cov-report xml:coverage.xml

lint: .venv
uv run ruff format .
uv run ruff check . --fix
uv run ty check RISE analysis
uv run ty check scrise

clean:
rm -rf output profile profile.svg factor_cache