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Merged
tsmathis merged 1 commit into from
Oct 22, 2026
Merged

Automated dependency upgrades #549

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118 changes: 63 additions & 55 deletions requirements/ubuntu-latest_py3.11.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -6,30 +6,32 @@
#
annotated-types==0.8.0
# via pydantic
arro3-core==0.8.1
arro3-core==0.9.1
# via deltalake
asttokens==3.0.2
# via stack-data
bibtexparser==1.4.4
# via pymatgen-core
blake3==1.0.9
blake3==1.0.11
# via emmet-core
blinker==1.9.0
# via flask
boto3==1.43.70
boto3==1.43.117
# via mp-api
botocore==1.43.70
botocore==1.43.117
# via
# boto3
# s3transfer
cachelib==0.15.4
cachelib==0.17.0
# via flask-caching
certifi==2026.7.22
certifi==2026.10.19
# via requests
charset-normalizer==3.5.0
charset-normalizer==3.5.2
# via requests
click==8.4.2
click==8.5.0
# via flask
cloudpickle==3.1.2
# via joblib
contourpy==1.3.3
# via matplotlib
cycler==0.12.1
Expand All @@ -42,75 +44,79 @@ deltalake==1.5.1
# via mp-api
deprecated==1.3.1
# via deltalake
emmet-core==0.87.1
emmet-core==0.87.3
# via mp-api
executing==2.2.1
executing==2.3.0
# via stack-data
flask==3.1.3
# via
# dash
# flask-caching
flask-caching==2.4.1
flask-caching==2.5.1
# via crystal_toolkit (pyproject.toml)
fonttools==4.63.0
fonttools==4.67.0
# via matplotlib
frozendict==2.4.7
# via crystal_toolkit (pyproject.toml)
idna==3.18
idna==3.20
# via requests
imageio==2.37.4
imageio==2.38.1
# via scikit-image
importlib-metadata==9.0.0
importlib-metadata==9.0.1
# via dash
inflect==7.5.0
inflect==7.6.0
# via emmet-core
ipython==9.16.1
ipython==9.17.1
# via crystal_toolkit (pyproject.toml)
ipython-pygments-lexers==1.1.1
# via ipython
itsdangerous==2.2.0
# via flask
jedi==0.20.0
jaraco-functools==4.6.0
# via inflect
jedi==0.20.1
# via ipython
jinja2==3.1.6
# via flask
jmespath==1.1.0
# via
# boto3
# botocore
joblib==1.5.3
joblib==1.6.0
# via
# pymatgen-core
# scikit-learn
kiwisolver==1.5.0
kiwisolver==1.5.1
# via matplotlib
latexcodec==3.0.1
# via pybtex
lazy-loader==0.5
lazy-loader==0.6
# via scikit-image
lxml==6.1.1
lxml==6.1.3
# via pymatgen-core
markupsafe==3.0.3
markupsafe==3.0.4
# via
# flask
# jinja2
# werkzeug
matplotlib==3.11.1
matplotlib==3.11.2
# via pymatgen-core
matplotlib-inline==0.2.2
# via ipython
monty==2026.7.16
monty==2026.10.21
# via
# emmet-core
# mp-api
# pymatgen-core
more-itertools==11.1.0
# via inflect
mp-api==0.46.4
more-itertools==11.2.1
# via
# inflect
# jaraco-functools
mp-api==0.46.5
# via crystal_toolkit (pyproject.toml)
mpmath==1.3.0
# via sympy
narwhals==2.24.0
narwhals==2.27.1
# via
# plotly
# scikit-learn
Expand All @@ -135,7 +141,7 @@ numpy==2.4.6
# shapely
# spglib
# tifffile
orjson==3.11.9
orjson==3.13.0
# via
# mp-api
# pymatgen-core
Expand All @@ -147,18 +153,18 @@ packaging==26.3
# scikit-image
palettable==3.3.3
# via pymatgen-core
pandas==3.0.5
pandas==3.0.6
# via pymatgen-core
parso==0.8.7
# via jedi
pexpect==4.9.0
# via ipython
pillow==12.3.0
pillow==13.0.0
# via
# imageio
# matplotlib
# scikit-image
plotly==6.9.0
plotly==7.1.0
# via
# dash
# pymatgen-core
Expand All @@ -170,40 +176,41 @@ ptyprocess==0.7.0
# via pexpect
pubchempy==1.0.5
# via emmet-core
pure-eval==0.2.3
pure-eval==0.2.4
# via stack-data
pyarrow==25.0.1
pyarrow==26.0.0
# via mp-api
pybtex==0.26.1
# via emmet-core
pydantic==2.13.4
pydantic==2.14.1
# via
# emmet-core
# pydantic-settings
# pymatgen-io-validation
pydantic-core==2.46.4
pydantic-core==2.50.1
# via pydantic
pydantic-settings==2.15.0
pydantic-settings==2.16.1
# via
# crystal_toolkit (pyproject.toml)
# emmet-core
# pymatgen-io-validation
pygments==2.20.0
pygments==2.21.0
# via
# ipython
# ipython-pygments-lexers
pymatgen==2026.5.4
pymatgen==2026.9.24
# via
# crystal_toolkit (pyproject.toml)
# emmet-core
# mp-api
pymatgen-core==2026.7.31
pymatgen-core==2026.10.16
# via
# emmet-core
# pymatgen
# pymatgen-io-validation
pymatgen-io-validation==0.1.3
pymatgen-io-validation==0.1.4
# via emmet-core
pyparsing==3.3.2
pyparsing==3.3.3
# via
# bibtexparser
# matplotlib
Expand All @@ -212,7 +219,7 @@ python-dateutil==2.9.0.post0
# botocore
# matplotlib
# pandas
python-dotenv==1.2.2
python-dotenv==1.2.4
# via pydantic-settings
pyyaml==6.0.3
# via pybtex
Expand All @@ -226,34 +233,34 @@ retrying==1.4.2
# via dash
ruamel-yaml==0.19.1
# via monty
s3transfer==0.19.2
s3transfer==0.19.3
# via boto3
scikit-image==0.26.0
# via crystal_toolkit (pyproject.toml)
scikit-learn==1.9.0
scikit-learn==1.9.1
# via crystal_toolkit (pyproject.toml)
scipy==1.17.1
# via
# pymatgen-core
# scikit-image
# scikit-learn
shapely==2.1.2
shapely==2.2.0
# via crystal_toolkit (pyproject.toml)
six==1.17.0
# via python-dateutil
spglib==2.7.0
spglib==2.8.0
# via pymatgen-core
stack-data==0.6.3
# via ipython
sympy==1.14.0
# via pymatgen-core
tabulate==0.10.0
# via pymatgen-core
threadpoolctl==3.6.0
threadpoolctl==3.7.0
# via scikit-learn
tifffile==2026.3.3
# via scikit-image
tqdm==4.70.0
tqdm==4.70.1
# via pymatgen-core
traitlets==5.16.1
# via
Expand All @@ -271,6 +278,7 @@ typing-extensions==4.16.0
# mp-api
# pydantic
# pydantic-core
# pydantic-settings
# spglib
# typeguard
# typing-inspection
Expand All @@ -280,21 +288,21 @@ typing-inspection==0.4.4
# pydantic-settings
uncertainties==3.2.3
# via pymatgen-core
urllib3==2.7.0
urllib3==2.8.0
# via
# botocore
# requests
wcwidth==0.8.2
wcwidth==0.9.3
# via prompt-toolkit
webcolors==25.10.0
# via crystal_toolkit (pyproject.toml)
werkzeug==3.1.8
werkzeug==3.1.9
# via
# dash
# flask
wrapt==2.3.0
wrapt==2.5.1
# via deprecated
zipp==4.1.0
zipp==4.1.2
# via importlib-metadata

# The following packages are considered to be unsafe in a requirements file:
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