chore(deps): bump the python-packages group with 6 updates

[dependabot]

Bumps the python-packages group with 6 updates:

Package	From	To
squawk-cli	2.53.0	2.61.0
alembic	1.18.4	1.18.5
pre-commit	4.6.0	4.6.1
pytest	9.0.3	9.1.1
ruff	0.13.3	0.16.0
diff-cover	10.2.1	10.4.1

Updates squawk-cli from 2.53.0 to 2.61.0

Release notes

Sourced from squawk-cli's releases.

Parser Improvements & A Parser Fix

Changed

• ide: refactor to use AnyName node (#1250)

• parser: refactor ast::RelationFromItem to use ast::RelationNameRef (#1251)

• parser: add more nodes for ast on top of cst -> more enums (#1248)

• parser: refactor Name/NameRef to more specific nodes (#1246, #1247)

  This also fixes schema qualified sequence names:

  CREATE TABLE foo (
      id int GENERATED ALWAYS AS IDENTITY (SEQUENCE NAME public.myseq START 1)
  );

require-timeout-settings rule is split & lock warning improvements

Added

• linter: split require-timeout-settings rule (#1233, #1217). Thanks @​zvdy!

  Now there's require-lock-timeout and require-statement-timeout

• linter: require-timeout-settings explain lock impact in the warning (#1216, #1219). Thanks @​edeetee!

  Now instead of saying:

  Missing `set lock_timeout` before potentially slow operations
  

  We say:

  Missing `set lock_timeout` before potentially slow ACCESS EXCLUSIVE lock operations
  

• parser: add pg19 support for json_table plan & index include columns (#1243)

Changed

• parser: add type specific rename nodes for alter statements (#1244)
• parser: add more specific name nodes (#1242)
• parser: split Path into Path & PathRef (#1241)
• parser: ast nodes for ColumnRef, FromItem union & more (#1232)

Fixed

• server: goto def for text search, op class (#1239)
• server: goto def on collate, type attrs, search path, fn column name (#1238)

... (truncated)

Changelog

Sourced from squawk-cli's changelog.

v2.61.0 - 2026-07-24

Changed

• ide: refactor to use AnyName node (#1250)

• parser: refactor ast::RelationFromItem to use ast::RelationNameRef (#1251)

• parser: add more nodes for ast on top of cst -> more enums (#1248)

• parser: refactor Name/NameRef to more specific nodes (#1246, #1247)

  This also fixes schema qualified sequence names:

  CREATE TABLE foo (
      id int GENERATED ALWAYS AS IDENTITY (SEQUENCE NAME public.myseq START 1)
  );

v2.60.0 - 2026-07-18

Added

• linter: split require-timeout-settings rule (#1233, #1217). Thanks @​zvdy!

  Now there's require-lock-timeout and require-statement-timeout

• linter: require-timeout-settings explain lock impact in the warning (#1216, #1219). Thanks @​edeetee!

  Now instead of saying:

  Missing `set lock_timeout` before potentially slow operations
  

  We say:

  Missing `set lock_timeout` before potentially slow ACCESS EXCLUSIVE lock operations
  

• parser: add pg19 support for json_table plan & index include columns (#1243)

Changed

• parser: add type specific rename nodes for alter statements (#1244)
• parser: add more specific name nodes (#1242)
• parser: split Path into Path & PathRef (#1241)
• parser: ast nodes for ColumnRef, FromItem union & more (#1232)

Fixed

... (truncated)

Commits

• b4f0f66 release: 2.61.0 (#1252)
• 4f45d64 parser: refactor ast::RelationFromItem to use ast::RelationNameRef (#1251)
• dce69b0 ide: refactor to use AnyName node (#1250)
• b569610 parser: add more nodes for ast on top of cst -> more enums (#1248)
• cafa57f parser: refactor even more Name/NameRef to more precise node types (#1247)
• d86f074 parser: refactor Name/NameRef to more specific nodes 1/? (#1246)
• 2739323 release: 2.60 (#1245)
• 15a939e parser: add type specific rename nodes for alter statements (#1244)
• eff82b7 parser: add pg19 support for json_table plan, include columns (#1243)
• 4952334 parser: add more specific name nodes (#1242)
• Additional commits viewable in compare view

Updates alembic from 1.18.4 to 1.18.5

Release notes

Sourced from alembic's releases.

1.18.5

Released: June 25, 2026

usecase

• [usecase] [commands] Added --splice support to the merge() command. Previously, the merge command would suggest using --splice when attempting to merge non-head revisions, but the flag was not actually accepted by the command. The splice parameter is now available in both the command-line interface and the command.merge() function, matching the existing support in command.revision(). Pull request courtesy Kadir Can Ozden.

  References: #1712

• [usecase] [environment] Added ScriptDirectory.get_heads.consider_depends_on parameter to ScriptDirectory.get_heads(). When set to True, head revisions that are also a dependency of another revision via depends_on are excluded from the result, matching the effective heads that would be present in the alembic_version table after running all upgrades.

  References: #1806

bug

• [bug] [autogenerate] Fixed rendering of dialect keyword arguments containing ~sqlalchemy.schema.Column objects within sequences, such as postgresql_include. These were previously rendered using repr(), producing invalid Python in the generated migration scripts. Column objects within list or tuple values are now correctly rendered as their string column names. Pull request courtesy Ajay Singh.

  References: #1258

• [bug] [mysql] Implemented type comparison for ENUM datatypes on MySQL, which checks that the individual enum values are equivalent. If additional entries are on either side, this generates a diff. Changes of order do not generate a diff. Pull request courtesy Furkan Köykıran.

  References: #1745, #779

• [bug] [operations] Fixed bug where the inline_references parameter of Operations.add_column() did not include foreign key referential actions such as ON DELETE, ON UPDATE, DEFERRABLE, INITIALLY, and MATCH when rendering the inline REFERENCES clause.

... (truncated)

Commits

• See full diff in compare view

Updates pre-commit from 4.6.0 to 4.6.1

Release notes

Sourced from pre-commit's releases.

pre-commit v4.6.1

Fixes

• Install language: node hooks via git.
  • Fixes npm 12.x compatibility
  • #3719 PR by @​asottile.
  • #3517 issue by @​ojob.
• Set JULIA_DEPOT_PATH for language: julia.
  • #3711 PR by @​damonbayer.
  • pre-commit-ci/runner-image#335 issue by @​damonbayer.
• Produce error on mistyped --repo for pre-commit autoupdate.
  • #3701 PR by @​mxr.
  • #3695 issue by @​mxr.
• Improve performance of commit existence check in pre-push.
  • #3726 PR by @​asottile.
  • #3604 issue by @​ptarjan.
• Avoid duplicating conflicted filenames during pre-commit run --all-files.
  • #3727 PR by @​asottile.
  • #3706 issue by @​RomanValov.

Changelog

Sourced from pre-commit's changelog.

4.6.1 - 2026-07-21

Fixes

• Install language: node hooks via git.
  • Fixes npm 12.x compatibility
  • #3719 PR by @​asottile.
  • #3517 issue by @​ojob.
• Set JULIA_DEPOT_PATH for language: julia.
  • #3711 PR by @​damonbayer.
  • pre-commit-ci/runner-image#335 issue by @​damonbayer.
• Produce error on mistyped --repo for pre-commit autoupdate.
  • #3701 PR by @​mxr.
  • #3695 issue by @​mxr.
• Improve performance of commit existence check in pre-push.
  • #3726 PR by @​asottile.
  • #3604 issue by @​ptarjan.
• Avoid duplicating conflicted filenames during pre-commit run --all-files.
  • #3727 PR by @​asottile.
  • #3706 issue by @​RomanValov.

Commits

• 242ce8a v4.6.1
• 766e550 Merge pull request #3727 from pre-commit/dedupe
• 1558d06 Merge pull request #3726 from pre-commit/exists-faster
• 8a1c47a avoid duplicate files in --all-files during conflict
• 2e01c99 faster check of rev existing locally as a commit
• 3613bf2 Merge pull request #3701 from pre-commit/autoupdate-repos
• 1d811d9 Return an error for invalid --repo
• 374d354 Merge pull request #3711 from damonbayer/dmb_JULIA_DEPOT_PATH
• 1e7994f set JULIA_DEPOT_PATH
• b2b9119 Merge pull request #3719 from pre-commit/npm-unknown-options
• Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

• #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
• #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
• #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
• #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

• #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

  If this is undesirable, move the fixture definition to a conftest.py file if possible.

  Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

• #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

  See 10819 and 14011.

• #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

  See dynamic-fixture-request-during-teardown for details.

• #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

  These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

  See parametrize-iterators for details and suggestions.

• #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

  See config-inicfg for more details.

• #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits

• cf470ec Prepare release version 9.1.1
• e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
• 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
• 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
• b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
• 9a567e0 [automated] Update plugin list (#14617) (#14618)
• ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
• 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
• 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
• 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
• Additional commits viewable in compare view

Updates ruff from 0.13.3 to 0.16.0

Release notes

Sourced from ruff's releases.

0.16.0

Release Notes

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

• Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules. Note that this is primarily an expansion, but 18 of the more opinionated pycodestyle (E) and pyflakes (F) rules have been removed from the default set: E401, E402, E701, E702, E703, E711, E712, E713, E714, E721, E731, E741, E742, E743, F403, F405, F406, and F722.

• Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

• Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

  import math  # ruff: ignore[F401]
  ruff: ignore[F401]
  import os

• Fixes are now shown in check and format --check output:

  ❯ ruff format --check .
  unformatted: File would be reformatted
   --> try.md:1:1
    |
  1 | ```python
    - import   math
  2 + import math
  3 | ```
    |
  1 file would be reformatted

  This example also shows off the Markdown formatting.

• format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

  ❯ ruff format --check --output-format github .
  ::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

  See the CLI help or documentation for the full list of supported formats.

• The filename, location, end_location, fix.edits[].location, and fix.edits[].end_location fields in the JSON output format may now be null rather than defaulting to the empty string and row 1, column 1, respectively.

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.0

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

• Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules. Note that this is primarily an expansion, but 18 of the more opinionated pycodestyle (E) and pyflakes (F) rules have been removed from the default set: E401, E402, E701, E702, E703, E711, E712, E713, E714, E721, E731, E741, E742, E743, F403, F405, F406, and F722.

• Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

• Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

  import math  # ruff: ignore[F401]
  ruff: ignore[F401]
  import os

• Fixes are now shown in check and format --check output:

  ❯ ruff format --check .
  unformatted: File would be reformatted
   --> try.md:1:1
    |
  1 | ```python
    - import   math
  2 + import math
  3 | ```
    |
  1 file would be reformatted

  This example also shows off the Markdown formatting.

• format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

... (truncated)

Commits

• a2635fd Bump 0.16.0 (#27136)
• 3433449 [ty] Reuse full call diagnostics for implicit setter calls (#27115)
• 2240070 Reflect ruff: ignore and --add-ignore stabilization in documentation (#27...
• 17ef711 Stabilize --add-ignore (#27125)
• ef912bb Add newly stabilized rules to defaults (#27055)
• b30f040 Stabilize new default rules (#27035)
• bcd70c5 Exclude Markdown files from format-dev runs (#27052)
• 87e51e2 Fix format --check spans for syntax errors (#27045)
• afe2723 [flake8-gettext] Stabilize qualified-name and built-in binding resolution (...
• a9702d8 [flake8-bandit] Stabilize string literal binding resolution (S310) (#26944)
• Additional commits viewable in compare view

Updates diff-cover from 10.2.1 to 10.4.1

Release notes

Sourced from diff-cover's releases.

Version 10.4.1

What's Changed

• Handle low confidence chardet detection for undeclared encodings by @​Bachmann1234 in Bachmann1234/diff_cover#611

Dependencies

• Bump setuptools from 80.9.0 to 83.0.0 by @​dependabot[bot] in Bachmann1234/diff_cover#609

Full Changelog: Bachmann1234/diff_cover@v10.4.0...v10.4.1

Version 10.4.0

What's Changed

• Add --branch-coverage flag to respect partial branch coverage by @​mofr in Bachmann1234/diff_cover#608

Dependency bumps

• Bump ruff from 0.15.12 to 0.15.15 by @​dependabot[bot] in Bachmann1234/diff_cover#602
• Bump black from 26.3.1 to 26.5.1 by @​dependabot[bot] in Bachmann1234/diff_cover#603
• Bump actions/cache from 5 to 6 by @​dependabot[bot] in Bachmann1234/diff_cover#604
• Bump actions/checkout from 6 to 7 by @​dependabot[bot] in Bachmann1234/diff_cover#605
• Bump ruff from 0.15.15 to 0.15.20 by @​dependabot[bot] in Bachmann1234/diff_cover#606
• Bump pylint from 4.0.5 to 4.0.6 by @​dependabot[bot] in Bachmann1234/diff_cover#607

New Contributors

• @​mofr made their first contribution in Bachmann1234/diff_cover#608

Full Changelog: Bachmann1234/diff_cover@v10.3.0...v10.4.0

Version 10.3.0

What's Changed

• Add --show-covered flag to highlight covered diff lines in HTML report by @​duxiaocheng in Bachmann1234/diff_cover#600
• Document previously undocumented CLI flags in README by @​Bachmann1234 in Bachmann1234/diff_cover#601

Full Changelog: Bachmann1234/diff_cover@v10.2.1...v10.3.0

Changelog

Sourced from diff-cover's changelog.

7/23/2026 v10.4.1

• Handle low confidence chardet detection for undeclared encodings. Fixes a failing test for chardet 7 and upgrades the tested suite to chardet7 (PR 611)[https://redirect.github.com/Handle low confidence chardet detection for undeclared encodings Bachmann1234/diff_cover#611] (bachmann1234)

7/21/2026 v10.4.0

• Add --branch-coverage flag to diff-cover to treat partially covered branches in Cobertura XML reports as uncovered PR 608 Thanks @​mofr

05/30/2026 v10.3.0

• Add --show-covered flag to highlight covered diff lines in HTML report PR 600 Thanks @​duxiaocheng

• Update readme with cli flags PR 601 Thanks me

05/23/2026 v10.2.1

• Fix --help hiding most CLI options in diff-cover/diff-quality PR 599 Thanks @​duxiaocheng

01/08/2026 v10.2.0

• Fixes issue where diff quality could not be run from subfolders PR 574 Issue 573 Thanks @​eacherkan-via

12/30/2025 v10.1.0

• Add support for floating-point total percentage in reports PR 565 thanks @​tilaven

12/09/2025 v10.0.0

• Remove python 3.9 support
• Add python 3.14 support
• Normalize exlude/include in pyproject.toml to support string or list

11/10/2025 v9.7.2

• Fix file path issue on windows. Thanks @​amos-chen PR 553

09/25/2025 v9.7.1

• Revert the change to attempt to support ruff >=0.12.9 (@​YeeaahMan caught the error)

09/23/2025 v9.7.0

• Adds the work @​kingbuzzman did to support windows!
• Fixes a bug where deleted files were not benig handled properly (thanks @​CliveCorbishleyTAL )
• Adds a mypy driver for diff_quality (thanks @​YeeaaahMan)
• Fixes ruff >=0.12.9 support (thanks again @​YeeaaahMan)

Some internal items

... (truncated)

Commits

• 8111a37 Version 10.4.1
• 291ee94 Handle low confidence chardet detection for undeclared encodings (#611)
• 147b410 Bump setuptools from 80.9.0 to 83.0.0 (#609)
• 8881685 Version 10.4.0
• ca4effc Add --branch-coverage flag to respect partial branch coverage (#608)
• b746a1b Bump pylint from 4.0.5 to 4.0.6 (#607)
• 85c493c Bump ruff from 0.15.15 to 0.15.20 (#606)
• c61cc9c Bump actions/checkout from 6 to 7 (#605)
• 4e02dae Bump actions/cache from 5 to 6 (#604)
• 42632b3 Bump black from 26.3.1 to 26.5.1 (#603)
• Additional commits viewable in compare view

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Note

Low Risk
Dependency-only change with no runtime Python package code edits; main follow-up risk is CI/dev tooling behavior (especially Ruff 0.16 defaults) rather than production logic.

Overview
Updates dependency pins only in pyproject.toml and regenerates poetry.lock (Poetry 2.4.1 metadata).

Runtime: squawk-cli minimum is raised from >=2.0 to >=2.61.0 (2.53.0 → 2.61.0 in the lock), bringing newer linter/parser behavior for PostgreSQL migration SQL.

Dev group: patch/minor bumps for alembic (1.18.5), pre-commit (4.6.1), pytest (9.1.1), diff-cover (10.4.1), and ruff (0.16.0)—a larger jump that may surface new lint/format behavior locally via poetry run ruff even though .pre-commit-config.yaml still pins the external ruff-pre-commit hook at v0.13.0.

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Squawk lower bound overly tightened

Medium Severity

Dependabot raised the runtime squawk-cli floor from >=2.0 to >=2.61.0. That broad lower bound is intentional so consumers can pin any squawk 2.x via additional_dependencies; the tighter floor conflicts with documented pins such as squawk-cli==2.41.0 and forces every install onto 2.61+.

 

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Looks like these dependencies are updatable in another way, so this is no longer needed.