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Update imported {standalone} scripts to current source (#280) - #281

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Melkiades merged 6 commits into
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280_update_standalone@main
Aug 11, 2026
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Update imported {standalone} scripts to current source (#280)#281
Melkiades merged 6 commits into
mainfrom
280_update_standalone@main

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@Melkiades

@Melkiades Melkiades commented Jul 1, 2026

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What changes are proposed in this pull request?

Synced the standalone helper files imported from insightsengineering/standalone to their current main versions via usethis::use_standalone():

Imported file before after
import-standalone-checks.R 2024-05-04 2026-08-10
import-standalone-stringr.R 2024-11-01 2026-06-30
import-standalone-tibble.R 2024-05-07 2026-06-30
import-standalone-forcats.R 2025-07-25 2026-06-30

The checks refresh carries a few behavior changes from upstream:

  • check_*() functions now error on empty input when allow_empty = FALSE (previously empty input silently passed). (standalone#30)
  • check_scalar() now errors on a length-1 list, and the length-1 error message reads "must be a vector of length 1". (standalone#35)
  • check_scalar_integerish() failures use their own condition class.

The crane test suite passes with these changes; the only snapshot update is the reworded check_scalar() message in tbl_survfit_times.

check_pkg_installed and cli_call_env already matched the source and were left unchanged. import-standalone-purrr.R is sourced from r-lib/rlang and is out of scope.

DESCRIPTION was intentionally left unchanged: use_standalone() stripped existing version pins (e.g. rlang (>= 1.1.5)), which is out of scope for a source refresh.

Reference GitHub issue associated with pull request. closes #280


Pre-review Checklist (if item does not apply, mark is as complete)

  • All GitHub Action workflows pass with a ✅
  • PR branch has pulled the most recent updates from master branch: usethis::pr_merge_main()
  • If a bug was fixed, a unit test was added.
  • Code coverage is suitable for any new functions/features (generally, 100% coverage for new code): devtools::test_coverage()
  • Request a reviewer

Reviewer Checklist (if item does not apply, mark is as complete)

  • If a bug was fixed, a unit test was added.
  • Run pkgdown::build_site(). Check the R console for errors, and review the rendered website.
  • Code coverage is suitable for any new functions/features: devtools::test_coverage()

When the branch is ready to be merged:

  • Update NEWS.md with the changes from this pull request under the heading "# cards (development version)". If there is an issue associated with the pull request, reference it in parentheses at the end update (see NEWS.md for examples).
  • All GitHub Action workflows pass with a ✅
  • Approve Pull Request
  • Merge the PR. Please use "Squash and merge" or "Rebase and merge".

Refresh the standalone helper files imported from
insightsengineering/standalone to their current main versions via
usethis::use_standalone():

- import-standalone-checks.R      (2024-05-04 -> 2025-05-08)
- import-standalone-stringr.R     (2024-11-01 -> 2026-06-30)
- import-standalone-tibble.R      (2024-05-07 -> 2026-06-30)
- import-standalone-forcats.R     (2025-07-25 -> 2026-06-30)

DESCRIPTION was intentionally left unchanged; use_standalone() removed
existing version pins, which is out of scope for a source refresh.
@Melkiades

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I would only wait for insightsengineering/standalone#33

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github-actions Bot commented Jul 1, 2026

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Unit Tests Summary

  1 files  260 suites   3m 7s ⏱️
260 tests 260 ✅ 0 💤 0 ❌
760 runs  760 ✅ 0 💤 0 ❌

Results for commit aa1c988.

♻️ This comment has been updated with latest results.

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badge

Code Coverage Summary

Filename                                 Stmts    Miss  Cover    Missing
-------------------------------------  -------  ------  -------  ------------------------------------------------------------------------------------------------
R/add_blank_rows.R                          63       0  100.00%
R/add_difference_row.R                     101       0  100.00%
R/add_forest_utils.R                        97      10  89.69%   76-79, 94-100
R/add_forest.R                             139       0  100.00%
R/add_hierarchical_count_row.R              33       0  100.00%
R/adjust_stat_columns_wrap.R                29       1  96.55%   59
R/annotate_gg_km.R                         141       0  100.00%
R/annotate_gg_pkc.R                         92       0  100.00%
R/annotate_gg.R                             81       0  100.00%
R/ard_tabulate_abnormal_by_baseline.R       65       0  100.00%
R/crane-package.R                            2       2  0.00%    26-27
R/deprecated.R                              21      21  0.00%    18-54
R/df_add_poolings.R                         41       0  100.00%
R/get_cox_pairwise_df.R                    163       0  100.00%
R/gg_km_utils.R                             39      14  64.10%   20-37
R/gg_km.R                                  143      37  74.13%   55-58, 75, 102, 176-181, 184-187, 197-199, 204-205, 239-241, 248-251, 255, 266-270, 283, 285-287
R/gg_lineplot.R                             94       0  100.00%
R/gg_mmrm_lineplot.R                       102       1  99.02%   106
R/gg_pkc_lineplot.R                         98       0  100.00%
R/gg_utils.R                               222       0  100.00%
R/h_pkparam_sort.R                         427     427  0.00%    12-468
R/label_roche.R                             72       0  100.00%
R/modify_header_rm_md.R                     18       2  88.89%   35-36
R/modify_zero_recode.R                      20       1  95.00%   64
R/pk_helper.R                               37      37  0.00%    14-146
R/reverse_difference_ci.R                   33       0  100.00%
R/tbl_baseline_chg.R                       188       0  100.00%
R/tbl_coxph.R                               90       1  98.89%   229
R/tbl_hierarchical_incidence_rate.R        291       4  98.63%   430-433
R/tbl_hierarchical_rate_and_count.R        339      13  96.17%   343, 425, 446-456
R/tbl_hierarchical_rate_by_grade.R         317       3  99.05%   169-171
R/tbl_listing.R                             35       0  100.00%
R/tbl_mmrm.R                               254       1  99.61%   393
R/tbl_null_report.R                          9       0  100.00%
R/tbl_rmpt.R                               157      12  92.36%   299-304, 316-321
R/tbl_roche_subgroups.R                    155       0  100.00%
R/tbl_roche_summary.R                       64       0  100.00%
R/tbl_shift.R                              116       0  100.00%
R/tbl_survfit_quantiles.R                  154       0  100.00%
R/tbl_survfit_times.R                       92       0  100.00%
R/tbl_with_pools.R                          64       0  100.00%
R/theme_gtsummary_roche.R                   87       1  98.85%   61
R/utils.R                                   42       0  100.00%
TOTAL                                     4827     588  87.82%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: aa1c988

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions Bot commented Jul 1, 2026

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Unit Test Performance Difference

Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
annotate_gg_pkc 💔 $0.26$ $+2.54$ annotate_pkc_df_warns_when_given_a_standard_ggplot_object
gg_km 💚 $3.13$ $-2.87$ gg_km_works_and_handles_annotations_correctly
tbl_hierarchical_incidence_rate 💚 $17.90$ $-2.29$ tbl_hierarchical_incidence_rate_runs_with_minimum_arguments
tbl_hierarchical_rate_by_grade 💔 $16.45$ $+2.21$ tbl_hierarchical_rate_by_grade_works
tbl_roche_subgroups 💔 $1.16$ $+2.63$ tbl_roche_subgroups_time_to_event_NULL_works
tbl_roche_summary 💚 $5.96$ $-3.70$ tbl_roche_summary_works
tbl_shift 💚 $6.85$ $-1.43$ tbl_shift_strata_location_
tbl_with_pools 💔 $8.72$ $+1.25$ tbl_with_pools_validates_inputs_correctly

Results for commit 320c776

♻️ This comment has been updated with latest results.

@shajoezhu shajoezhu left a comment

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lgtm!

@Melkiades

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deepends on insightsengineering/standalone#33

check_*() functions now error on empty input when allow_empty = FALSE, and
check_scalar_integerish() failures use their own condition class.
Syncs the latest upstream change (insightsengineering/standalone#35):
check_scalar() now errors on a length-1 list, and the length-1 message reads
'must be a vector of length 1'. Updated the tbl_survfit_times snapshot to match
the new wording.
@Melkiades
Melkiades merged commit b4b3013 into main Aug 11, 2026
32 checks passed
@Melkiades
Melkiades deleted the 280_update_standalone@main branch August 11, 2026 07:48
@github-actions github-actions Bot locked and limited conversation to collaborators Aug 11, 2026
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Update imported {standalone} scripts to current source

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