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  1. FunFlux FunFlux Public

    FunFlux: A dedicated workflow for fungal genome assembly from short reads, decontamination, completeness validation, and comprehensive gene annotation.

    Python 14 2

  2. BacFlux BacFlux Public

    Snakemake workflow for bacterial whole-genome sequencing: assembly, QC, taxonomy, annotation, AMR and virulence, plasmids and prophages — plus an optional mobilome module that reports whether each …

    Python 12 1

  3. MetaFlux MetaFlux Public

    Unified short-read workflow for multi-marker amplicon (16S, ITS, 18S, gyrB, rpoB) and shotgun taxonomic profiling. Snakemake, conda-based, reproducible.

    Python 7

  4. FunFluxL FunFluxL Public

    Long-read fungal genome assembly and annotation workflow

    Python 1 1

  5. TabFlux TabFlux Public

    Machine-learning classification of microbial community profiles

    R 4