Adding the ability to extract additional bam-readcount fields into the #85
Open
chrisamiller wants to merge 1 commit into
Open
Adding the ability to extract additional bam-readcount fields into the #85chrisamiller wants to merge 1 commit into
chrisamiller wants to merge 1 commit into
Conversation
99e3d92 to
9dd2660
Compare
Collaborator
Author
|
removed dockerfile - we'll make that a separate PR with github actions and such |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I worked this up a while back, upon request of some folks doing heavy-duty variant filtering, and am just getting around to cleaning it up and pushing it. It adds code to extract one or more of the detailed bam-readcount fields about variants and their supporting reads and adds that info to the VCF.