Diffractive imaging - #269

Merged

smribet merged 77 commits into

devfrom

diffractive_imaging

Aug 3, 2026

Commits on Apr 19, 2026

update to pretrain object plotting functions
smribet
committed
b3fad62

Commits on Apr 22, 2026

fixing type hints
arthurmccray
committed
24f2e3d

Commits on Apr 23, 2026

adding final activation
smribet
committed
2cd6d12

Commits on May 6, 2026

position correction plotting and functionality for ptycholite
smribet
committed
e7b2ce0
small bug fix
smribet
committed
0c5fe6e
one more tiny bug fix
smribet
committed
b504b76

Commits on May 19, 2026

Commits on May 20, 2026

return fig options
smribet
committed
beb1dd9

Commits on May 21, 2026

getting working for DGP
arthurmccray
committed
0e7396a

Commits on May 22, 2026

cleaning up multi GPU DGP fixing bugs in lr and opt persistence
arthurmccray
committed
f5c0c73
consistent devices
arthurmccray
committed
34a09ce
fixing linter errors
arthurmccray
committed
f1417fe
fix for optimize hyperparameters
smribet
committed
578ace1

Commits on May 23, 2026

converting ptycho to dataloader while maintaining jupyter notebook multi GPU compatibility
arthurmccray
committed
71840e0
move _build_dataloaders to ptychography_base
arthurmccray
committed
caa5c39
bug fix
smribet
committed
5e36706

Commits on May 26, 2026

Commits on May 27, 2026

adding iterative ptycho constraint params
arthurmccray
committed
07d739b
removing additional constraint flags from reconstruct
arthurmccray
committed
e5207c8
improving constraint params docstrings, parse_dict
arthurmccray
committed
10d3538

Commits on May 28, 2026

changing pure_phase to be unwrapped real values
arthurmccray
committed
e3d15ae
bugfix of initializing to first devices even if not specified
arthurmccray
committed
85dfa3f
adding TODO for amp/phase tv weight splitting
arthurmccray
committed
74f52ea

Commits on May 29, 2026

moving hard constraints outside of computational graph
arthurmccray
committed
b7d084b
workingish ptycho inr
arthurmccray
committed
72efce9
fixing linter errors
arthurmccray
committed
0c55030

Commits on Jun 1, 2026

Merge branch 'optmixin_pplr' into diffractive_imaging
arthurmccray
committed
ae503f7
Merge branch 'optmixin_pplr' into diffractive_imaging
arthurmccray
committed
3807f6e
adding loss criterion organization, testing inr with s3im and smoothl1
arthurmccray
committed
5488cd9
bufix of saving criterion, potential INR to softplus final activation by default
arthurmccray
committed
990430a
comment removal
arthurmccray
committed
f8e300f
Merge branch 'dev' into diffractive_imaging
arthurmccray
committed
e977ba4
Merge branch 'diffractive_imaging' into multi_gpu_ptycho
arthurmccray
committed
0b15305
Merge branch 'multi_gpu_ptycho' into ptycho_constraints
arthurmccray
committed
73c9aee
Merge branch 'ptycho_constraints' into ptycho_inr
arthurmccray
committed
4a6478b

Commits on Jun 2, 2026

fixing linter error
arthurmccray
committed
586c1d3
Merge pull request #234 from arthurmccray/multi_gpu_ptycho
arthurmccray
authored
7b7566d

Commits on Jun 3, 2026

initial workingish kplanes
arthurmccray
committed
c26c6bf
Merge pull request #241 from arthurmccray/ptycho_constraints
arthurmccray
authored
7400459
Merge branch 'dev' into diffractive_imaging
arthurmccray
committed
732aac7
Merge branch 'diffractive_imaging' into ptycho_inr
arthurmccray
committed
00938eb
bug fix
smribet
committed
8c6ea7e
device and lr changes. all ptycholite.
smribet
committed
d906a10
fixing linter errors kplanes
arthurmccray
committed
e067d6b
Merge branch 'diffractive_imaging' into ptycho_inr
arthurmccray
committed
dcfb122

Commits on Jun 4, 2026

adding hard constraints for INR positivity
arthurmccray
committed
c2bf1bf
adding show probe function
smribet
committed
6e111d5

Commits on Jun 10, 2026

adding alternative upsampling method to CNNs
arthurmccray
committed
c71ad00
fixing linter errors in ptycho viz
arthurmccray
committed
9b1aec9
Merge branch 'diffractive_imaging' into ptycho_inr
arthurmccray
committed
68ac07b
fixing bug of constraints not being passed to multiple gpus
arthurmccray
committed
e2f084d
fixing bug in poisson loss scaling for batch sizes
arthurmccray
committed
5027a72
cleaning up some type hints
arthurmccray
committed
4045da2

Commits on Jun 11, 2026

Commits on Jun 12, 2026

correcting stig rotation
smribet
committed
61ca852
basic plotting
smribet
committed
44481bc
Merge remote-tracking branch 'origin/diffractive_imaging' into direct_ptycho_refactor
smribet
committed
c837502
fixing bug in com determination when DP sum = 0
arthurmccray
committed
5fa1c61
Revert "correcting stig rotation"
smribet
committed
b79ab8d
adding position masking to iterative ptycho
arthurmccray
committed
e7cd652

Commits on Jun 13, 2026

small vis change
smribet
committed
2a4972e

Commits on Jun 15, 2026

clean up
gvarnavi
committed
6e15f34
Merge pull request #249 from smribet/direct_ptycho_refactor
smribet
authored
c9b4f1e

Commits on Jun 17, 2026

fixing device handling coverage in models, passing kwaargs in show_fourier_probe
arthurmccray
committed
54618f9

Commits on Jul 2, 2026

fixing bug combining large aspect ratio scans with large com_rotations
arthurmccray
committed
63e06bc

Commits on Jul 7, 2026

reducing memory for preprocessing and free port bugfix
arthurmccray
committed
27ba927

Commits on Jul 22, 2026

memory optimizations for preprocessing
arthurmccray
committed
571f4f6

Commits on Jul 31, 2026

big cleanup of iterative ptycho code, simplifications and bugfixes
arthurmccray
committed
19f85de

Commits on Aug 2, 2026

some code simplifications and dedup
arthurmccray
committed
50b6ce3
fixing seed for INR tests
arthurmccray
committed
507acb0