Migrate to CTK 13 as the default for Linux.

[trivialfis]

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[Copilot]

Pull request overview

Updates the project’s CI/container toolchain in support of CUDA Toolkit 13 (CTK 13) usage on Linux by refreshing container build arguments and dependencies.

Changes:

• Bump Miniforge version across Linux container Dockerfiles to 26.3.2-3.
• Update CUDA 13 CI build args to 13.3.0 and bump NCCL version to 2.30.7-1; align CUDA 13 NCCL package install to use CUDA_SHORT.
• Adjust Linux CPU test conda environment dependencies (adds libgrpc, reorganizes a few deps) and update clang-tidy container to LLVM/clang 21.

Reviewed changes

Copilot reviewed 11 out of 11 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
containers/dockerfile/Dockerfile.manylinux_2_28_aarch64	Miniforge version bump for manylinux aarch64 image.
containers/dockerfile/Dockerfile.jvm_gpu_build	Miniforge version bump for JVM GPU build image.
containers/dockerfile/Dockerfile.jvm	Miniforge version bump for JVM image.
containers/dockerfile/Dockerfile.gpu_build_rockylinux8	Miniforge version bump; removes in-image gRPC build step.
containers/dockerfile/Dockerfile.gpu_build_r_rockylinux8	Miniforge version bump for R GPU build image.
containers/dockerfile/Dockerfile.gpu_build_cuda13_rockylinux8	Miniforge version bump; NCCL install now parameterized by CUDA_SHORT.
containers/dockerfile/Dockerfile.gpu	Miniforge version bump for GPU runtime/test image.
containers/dockerfile/Dockerfile.cpu	Miniforge version bump; removes in-image gRPC build step.
containers/dockerfile/Dockerfile.clang_tidy	Updates LLVM apt repo/packages and alternatives from clang-tidy 19 → 21.
containers/conda_env/linux_cpu_test.yml	Updates CPU test environment deps (adds libgrpc, reorganizes some packages).
containers/ci_container.yml	Bumps NCCL version; sets CUDA 13 build lane to CUDA 13.3.0.

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[Copilot]

Pull request overview

Copilot reviewed 13 out of 13 changed files in this pull request and generated no new comments.

Comments suppressed due to low confidence (1)

containers/extract_build_args.sh:8

• The example now uses CUDA_VERSION, but other nearby docs/tools in this repo still mention *_ARG (e.g. CUDA_VERSION_ARG). Since extract_build_args.jq emits keys exactly as they appear under build_args in containers/ci_container.yml (and these match Dockerfile ARG names), it would help to clarify in this example that there is no *_ARG suffix to avoid confusion when copying/pasting.

##   CONTAINER_DEF='clang_tidy' BUILD_ARGS='--build-arg CUDA_VERSION=13.3.0'