random_spr_walk

Sample trees from a random walk on the subtree prune-and-regraft (SPR) treespace graph

Name		Name	Last commit message	Last commit date
figs		figs
interesting_trees		interesting_trees
spr_graphs		spr_graphs
test		test
walks		walks
.gitignore		.gitignore
Forest.h		Forest.h
LCA.h		LCA.h
Makefile		Makefile
Node.h		Node.h
README.md		README.md
analyze_mat.bash		analyze_mat.bash
analyze_test_mat.bash		analyze_test_mat.bash
analyze_test_mat_all.bash		analyze_test_mat_all.bash
averages_with_standard_error.pl		averages_with_standard_error.pl
combine_curvature_commute.pl		combine_curvature_commute.pl
convert_list		convert_list
copy_curvature_files.sh		copy_curvature_files.sh
copy_graph_files.sh		copy_graph_files.sh
do_plot_curvature_MCT.sh		do_plot_curvature_MCT.sh
do_plot_pairwise_MCT.sh		do_plot_pairwise_MCT.sh
do_process_graphs.bash		do_process_graphs.bash
do_test_walks.bash		do_test_walks.bash
logll_magnitudes.pl		logll_magnitudes.pl
nni_neighbors.h		nni_neighbors.h
plot_MCT.r		plot_MCT.r
plot_curvature_MCT.r		plot_curvature_MCT.r
random_spr_walk.cpp		random_spr_walk.cpp
random_spr_walk.h		random_spr_walk.h
spr_neighbors.h		spr_neighbors.h

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