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Add script to segment EM data with feathered tiling - #1385

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@anwai98 anwai98 commented Oct 8, 2026

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Okay this helped me learning something new today hehe (due to a tricky problem that arrived from Tom (Boissonet)'s group!)

In short: I hacked up a weighted average over tile overlap strategy, which removes strange stitching artifacts which cannot be recovered due to the obvious tile-wise cropping of decoder outputs! (good idea to try out for other projects where I've also faced this ;))

I'm opening this PR to check for CIs for me hehe. Gonna merge this once the tests pass!

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anwai98 commented Oct 8, 2026

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Okay new pydantic release is breaking bioimageio.spec. Lemme see what's up!

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anwai98 marked this pull request as draft October 9, 2026 07:49
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anwai98 commented Oct 9, 2026

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Let's wait for bioimage-io/spec-bioimage-io#773

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