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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 171 162

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    Python 136 71

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 86 35

  4. peartree peartree Public

    JavaScript 61 5

  5. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 51 14

  6. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 31 42

Repositories

Showing 10 of 56 repositories
  • scylla Public

    single sample processing

    artic-network/scylla's past year of commit activity
    Python 10 GPL-3.0 7 6 4 Updated Sep 11, 2026
  • artic-doc Public
    artic-network/artic-doc's past year of commit activity
    HTML 0 6 1 0 Updated Sep 8, 2026
  • amplicon-nf Public

    Amplicon genome assembly for ARTIC style primer schemes using Nextflow.

    artic-network/amplicon-nf's past year of commit activity
    Nextflow 14 MIT 7 2 0 Updated Sep 3, 2026
  • primal-page Public
    artic-network/primal-page's past year of commit activity
    HTML 6 1 0 0 Updated Aug 28, 2026
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    artic-network/fieldbioinformatics's past year of commit activity
    Python 136 MIT 91 2 0 Updated Aug 26, 2026
  • peartree Public
    artic-network/peartree's past year of commit activity
    JavaScript 61 MIT 5 13 0 Updated Aug 20, 2026
  • bed2idt Public

    Convert bedfiles to IDT custom spreadsheets

    artic-network/bed2idt's past year of commit activity
    Python 4 BSD-3-Clause 2 0 0 Updated Jul 15, 2026
  • table-top Public

    System for delivering documents and data in an interactive training exercise

    artic-network/table-top's past year of commit activity
    HTML 0 MIT 1 0 0 Updated Jul 6, 2026
  • raccoon-nf Public

    A nextflow implementation of https://github.com/aineniamh/raccoon

    artic-network/raccoon-nf's past year of commit activity
    Nextflow 1 MIT 1 0 1 Updated Jul 6, 2026
  • civet Public

    Cluster Investigation & Virus Epidemiology Tool

    artic-network/civet's past year of commit activity
    Python 51 GPL-3.0 14 32 0 Updated Jul 6, 2026
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