fix: pass setup item through generated deploy CLI

[alongubkin]

Summary

• add --setup-item to generated deployment CLIs
• carry the selection through deployment metadata lookup and manager initialization
• expose the selection on the manager deployment-store contract for embedded managers
• regenerate the manager OpenAPI and Rust SDK inputs

Test plan

• cargo nextest run -p alien-manager -p alien-deploy-cli (469 passed; 1 skipped)

Linear: ALIEN-601

[greptile-apps]

Greptile Summary

The PR carries a generated deployment CLI’s setup-item selection through platform metadata lookup and manager initialization.

• Adds the --setup-item deployment option and includes it in both deployment-info and initialize requests.
• Extends the manager initialization and deployment-store creation contracts for embedded manager implementations.
• Regenerates the manager OpenAPI and Rust SDK inputs and updates affected tests.

Confidence Score: 5/5

The PR appears safe to merge, with the setup-item selection consistently carried across the changed CLI and manager contract boundaries.

No concrete changed-code failure remains after checking argument forwarding, request serialization, manager initialization, and the deployment-store interface.

Important Files Changed

Filename	Overview
crates/alien-deploy-cli/src/commands/up.rs	Adds the setup-item flag and consistently forwards its selection to deployment metadata lookup and manager initialization.
crates/alien-manager/src/routes/sync.rs	Extends the initialize request and passes the optional selection through the deployment-store creation boundary.
crates/alien-manager/src/traits/deployment_store.rs	Exposes the optional setup-item selection to replaceable deployment-store implementations.
crates/alien-manager/src/routes/deployments.rs	Updates direct deployment creation to explicitly omit setup-item selection where that API does not provide one.
crates/alien-manager/openapi.json	Regenerates the manager API schema with the optional setupItem initialization property.
client-sdks/manager/openapi.json	Keeps the distributable manager client contract aligned with the service schema.
client-sdks/manager/rust/openapi-3.0.json	Keeps the Rust manager SDK generation input aligned with the initialization contract.

Sequence Diagram

sequenceDiagram
    participant G as Generated deploy CLI
    participant P as Platform API
    participant M as Manager API
    participant S as Deployment store
    G->>P: "GET /v1/deployment-info?platform=...&setupItem=..."
    P-->>G: Setup metadata and inputs
    G->>M: POST /v1/initialize with setupItem
    M->>S: create_deployment(setup_item)
    S-->>M: Deployment record
    M-->>G: Deployment ID, model, and token

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