Bursting with joy

This repo continue to be less than ideally organized and documented. However, it does document the state of our analysis code as of the start of summer 2026. If you've followed a DOI link to this release from one of our papers, then hopefully it is reasonably obvious where to navigate in the repo to find the relevant code; if not, contact us in the UW Bothell Intelligent Networks Lab and we will clarify.

What's Changed

• STDP Histogram and Boxplot joint plot by @varndorfer in #30
• Added GNN_Interpretation of Burst Scripts by @priyadhanu14 in #31

New Contributors

• @priyadhanu14 made their first contribution in #31

Full Changelog: v0.5-alpha...v0.6-alpha

It's about time

Our apologies; this repo is, as a whole, not ready for prime time, in that it lacks comprehensive documentation, is cluttered with many ad hoc code snippets, and has a fair amount of code that is not yet fixed up to be very generally reusable. However, we do feel that it is important to make the code associated with our data analyses publicly accessible and to make it clear exactly what code we used for our published papers. If you've followed a DOI link to this release from one of our papers, then hopefully it is reasonably obvious where to navigate in the repo to find the relevant code; if not, contact us in the UW Bothell Intelligent Networks Lab and we will clarify. It's an imperfect world, and we are doing our part!

In a Nutshell

This release is for summer 2025 and is intended to support papers submitted through September. The title captures both the fact that it has been a long time since we authored a release and that the most recent code is for analyzing spike timing dependent plasticity effects on neural network structure and behavior. Also includes code for spatiotemporal behavior analysis of neural networks and analysis of ESCS data. And we did do some cleanup.

What's Changed

• Burst code cleanup by @vttieu in #13
• Graph analysis by @stiber in #17
• Spike window analysis by @stiber in #18
• [ISSUE 22] Analysis of escs simulation output by @jardiamj in #23
• Issue.25 generation of synthetic data by @lscott-uw in #28
• Efficient Avalanche Characterization by @ArjunBoi in #29
• STDP Analysis functions by @varndorfer in #27

New Contributors

• @vttieu made their first contribution in #13
• @stiber made their first contribution in #17
• @jardiamj made their first contribution in #23
• @lscott-uw made their first contribution in #28
• @ArjunBoi made their first contribution in #29
• @varndorfer made their first contribution in #27

Full Changelog: v0.1-alpha...v0.5-alpha

Horrible Horrible Hippo

This is being released only to generate a DOI on Zenodo. Very messy pile of code.