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The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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  1. SVE SVE Public

    Python 51 11

  2. LIRICAL LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    Java 47 15

  3. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 47 17

  4. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 45 6

  5. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

    Python 37 4

  6. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 33 6

Repositories

Showing 10 of 401 repositories
  • sci-image-visualizer Public

    Browser-based scientific image visualization for Angular — OpenSeadragon (WSI), Plotly (2D/3D) and napari-js (WebGPU) rendering, region/annotation editing, and in-browser SAM segmentation. Extracted from jit-ui #80.

    TheJacksonLaboratory/sci-image-visualizer's past year of commit activity
    TypeScript 3 MIT 1 4 0 Updated Oct 3, 2026
  • geneweaver Public
    TheJacksonLaboratory/geneweaver's past year of commit activity
    JavaScript 1 Apache-2.0 0 0 3 Updated Oct 2, 2026
  • cellnoor Public

    A web application and RESTful API that aggregates, displays, and allows comprehensive querying of single-cell biological data.

    TheJacksonLaboratory/cellnoor's past year of commit activity
    Rust 3 MIT 0 35 3 Updated Oct 2, 2026
  • jds-nf-workflows Public

    The Jackson Laboratory Data Science Nextflow based analysis workflows

    TheJacksonLaboratory/jds-nf-workflows's past year of commit activity
    Nextflow 27 MIT 12 0 0 Updated Oct 1, 2026
  • xenium-panel-convert Public

    A command-line utility for converting files to the formats accepted by the 10x Genomics Xenium Panel Designer.

    TheJacksonLaboratory/xenium-panel-convert's past year of commit activity
    Rust 2 MIT 0 9 0 Updated Oct 1, 2026
  • hpo-web Public

    a web application to search and navigate the Human Phenotype Ontology (HPO)

    TheJacksonLaboratory/hpo-web's past year of commit activity
    HTML 16 13 13 0 Updated Sep 30, 2026
  • DIANNE Public

    Interactive image annotator of spatial differential attributes

    TheJacksonLaboratory/DIANNE's past year of commit activity
    JavaScript 1 2 1 1 Updated Sep 30, 2026
  • ontology-annotation-network Public

    A rest-api to serve a neo4j database of supported ontology annotations.

    TheJacksonLaboratory/ontology-annotation-network's past year of commit activity
    Java 3 1 0 0 Updated Sep 29, 2026
  • image-processing-ia Public Forked from datacarpentry/image-processing

    Image Processing with Python

    TheJacksonLaboratory/image-processing-ia's past year of commit activity
    HTML 0 128 0 0 Updated Sep 29, 2026
  • jds-ui-toolkit Public

    The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages across the JAX Data Science ecosystem.

    TheJacksonLaboratory/jds-ui-toolkit's past year of commit activity
    TypeScript 1 MIT 0 0 2 Updated Sep 24, 2026
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