Bump the gha group across 1 directory with 9 updates

[dependabot]

Bumps the gha group with 9 updates in the / directory:

Package	From	To
actions/checkout	7.0.0	7.0.1
actions/setup-python	6.3.0	7.0.0
lycheeverse/lychee-action	2.8.0	2.9.0
scitools/workflows/.github/workflows/ci-manifest.yml	2026.06.0	2026.07.1
scitools/workflows/.github/workflows/ci-template-check.yml	2026.06.0	2026.07.1
pypa/gh-action-pypi-publish	1.14.0	1.14.2
actions/labeler	6.1.0	7.0.0
scitools/workflows/.github/workflows/refresh-lockfiles.yml	2026.06.0	2026.07.1
actions/stale	10.3.0	11.0.0

Updates actions/checkout from 7.0.0 to 7.0.1

Release notes

Sourced from actions/checkout's releases.

v7.0.1

What's Changed

• skip running unsafe pr check if input is default by @​aiqiaoy in actions/checkout#2518
• trim only ascii whitespace for branch by @​aiqiaoy in actions/checkout#2521
• escape values passed to --unset by @​aiqiaoy in actions/checkout#2530
• Various dependency updates

Full Changelog: actions/checkout@v7...v7.0.1

Changelog

Sourced from actions/checkout's changelog.

Changelog

v7.0.1

• Skip running unsafe pr check if input is default by @​aiqiaoy in actions/checkout#2518
• Trim only ascii whitespace for branch by @​aiqiaoy in actions/checkout#2521
• Escape values passed to --unset by @​aiqiaoy in actions/checkout#2530
• Various dependency updates

v7.0.0

• Block checking out fork PR for pull_request_target and workflow_run by @​aiqiaoy in actions/checkout#2454
• Various dependency updates

v6.0.3

• Fix checkout init for SHA-256 repositories by @​yaananth in actions/checkout#2439
• fix: expand merge commit SHA regex and add SHA-256 test cases by @​yaananth in actions/checkout#2414

v6.0.2

• Fix tag handling: preserve annotations and explicit fetch-tags by @​ericsciple in actions/checkout#2356

v6.0.1

• Add worktree support for persist-credentials includeIf by @​ericsciple in actions/checkout#2327

v6.0.0

• Persist creds to a separate file by @​ericsciple in actions/checkout#2286
• Update README to include Node.js 24 support details and requirements by @​salmanmkc in actions/checkout#2248

v5.0.1

• Port v6 cleanup to v5 by @​ericsciple in actions/checkout#2301

v5.0.0

• Update actions checkout to use node 24 by @​salmanmkc in actions/checkout#2226

v4.3.1

• Port v6 cleanup to v4 by @​ericsciple in actions/checkout#2305

v4.3.0

• docs: update README.md by @​motss in actions/checkout#1971
• Add internal repos for checking out multiple repositories by @​mouismail in actions/checkout#1977
• Documentation update - add recommended permissions to Readme by @​benwells in actions/checkout#2043
• Adjust positioning of user email note and permissions heading by @​joshmgross in actions/checkout#2044
• Update README.md by @​nebuk89 in actions/checkout#2194
• Update CODEOWNERS for actions by @​TingluoHuang in actions/checkout#2224
• Update package dependencies by @​salmanmkc in actions/checkout#2236

v4.2.2

• url-helper.ts now leverages well-known environment variables by @​jww3 in actions/checkout#1941
• Expand unit test coverage for isGhes by @​jww3 in actions/checkout#1946

v4.2.1

• Check out other refs/* by commit if provided, fall back to ref by @​orhantoy in actions/checkout#1924

... (truncated)

Commits

• 3d3c42e prep v7.0.1 release (#2531)
• 2880268 escape values passed to --unset (#2530)
• 12cd223 trim only ascii whitespace for branch (#2521)
• 62661c4 skip running unsafe pr check if input is default (#2518)
• e8d4307 Bump the minor-actions-dependencies group with 2 updates (#2499)
• 631c942 eslint 9 (#2474)
• 4f1f4ae Bump actions/upload-artifact from 4 to 7 (#2476)
• ba09753 Bump actions/checkout from 6 to 7 (#2488)
• b9e0990 Bump docker/login-action from 3.3.0 to 4.2.0 (#2479)
• e8cb398 Bump docker/build-push-action from 6.5.0 to 7.2.0 (#2478)
• Additional commits viewable in compare view

Updates actions/setup-python from 6.3.0 to 7.0.0

Release notes

Sourced from actions/setup-python's releases.

v7.0.0

What's Changed

Enhancements

• Migrate to ESM and upgrade dependencies by @​priyagupta108 in actions/setup-python#1330
• Pin SHA commits and update docs with latest versions by @​HarithaVattikuti in actions/setup-python#1338
• Remove the pip-install input by @​gowridurgad in actions/setup-python#1336

Bug Fix

• Fix to Classify stderr warning messages as warnings instead of errors in annotations by @​lmvysakh in actions/setup-python#1335
• Validate and retry manifest fetch to prevent silent failures by @​priyagupta108 in actions/setup-python#1332

Dependency Upgrade

• Bump certifi from 2020.6.20 to 2024.7.4 in /tests/data by @​dependabot in actions/setup-python#1328
• Remove EOL Python versions and Bumps numpy text fixture by @​priya-kinthali in actions/setup-python#1333
• Upgrade @​actions/cache to 6.2.0 by @​philip-gai in actions/setup-python#1337

New Contributors

• @​lmvysakh made their first contribution in actions/setup-python#1335
• @​philip-gai made their first contribution in actions/setup-python#1337

Full Changelog: actions/setup-python@v6...v7.0.0

Commits

• 5fda3b9 Pin SHA commits and update docs with latest versions (#1338)
• 4ab7e95 Merge pull request #1337 from actions/philip-gai/bump-actions-cache-6-2-0
• 0f3a009 Remove the pip-install input (#1336)
• f8cf429 Migrate to ESM and upgrade dependencies (#1330)
• 54baeea Validate and retry manifest fetch to prevent silent failures (#1332)
• c709277 Annotation code fix (#1335)
• 6849080 remove EOL Python versions and Bumps numpy text fixture (#1333)
• 0903b46 Bump certifi from 2020.6.20 to 2024.7.4 in /tests/data (#1328)
• See full diff in compare view

Updates lycheeverse/lychee-action from 2.8.0 to 2.9.0

Release notes

Sourced from lycheeverse/lychee-action's releases.

v2.9.0

Summary

This release updates the default lychee version from v0.23.0 to v0.24.2.

The main reason for this release is compatibility with the new lychee 0.24.x release artifacts. Starting with lychee v0.24.0, the archive layout changed, and the lychee binary may now be packaged inside a subdirectory. lychee-action now detects that layout automatically, so users can upgrade without changing their workflows.

If you use:

uses: lycheeverse/lychee-action@v2

you will get the new version once the floating v2 tag has been updated. If you pin exact versions, update to:

uses: lycheeverse/lychee-action@v2.9.0

What’s new from lychee v0.24.x

Better diagnostics

lychee now reports line and column numbers for detected links. This makes broken link reports easier to act on, especially in larger documentation sites or generated reports.

Text fragment checking

lychee can now check URL text fragments, such as links containing #:~:text=.... This helps catch links that point to a valid page but no longer points to the intended highlighted text.

Sitemap support

lychee can now read sitemap.xml inputs. This is useful for checking published websites or generated documentation sites where the sitemap is the easiest source of URLs to validate.

JUnit output

lychee now supports JUnit output. This makes it easier to integrate link checking results with CI systems and test reporting tools that understand JUnit XML.

Redirect and remap visibility

lychee can now show redirects and remaps more clearly. This helps explain why a URL was checked as a different final URL and makes debugging link-checking behavior easier.

Multiple config files

lychee now supports multiple configuration files and expanded config handling. This is useful for repositories that split documentation, website, or package-specific link-checking settings.

Timeout handling

lychee can now accept timeouts explicitly. This gives users more control over how strict their link checks should be for flaky or slow endpoints.

Fixes and reliability improvements

... (truncated)

Commits

• e747777 Bump actions/cache from 5 to 6 (#340)
• 39066c6 Bump actions/checkout from 6 to 7 (#339)
• 6da1d14 Install into $RUNNER_TEMP instead of $HOME (#338)
• a63497c fixes #322 check for null (#336)
• b40e218 [create-pull-request] automated change
• faea714 bump default to 0.24.1 and auto-detect lychee bin in subfolder (#330)
• See full diff in compare view

Updates scitools/workflows/.github/workflows/ci-manifest.yml from 2026.06.0 to 2026.07.1

Release notes

Sourced from scitools/workflows/.github/workflows/ci-manifest.yml's releases.

2026.07.1

What's Changed

• Bump actions/checkout from 6.0.2 to 7.0.0 by @​dependabot[bot] in SciTools/workflows#196

Full Changelog: SciTools/workflows@2026.07.0...2026.07.1

2026.07.0

What's Changed

• Bump actions/setup-python from 6.2.0 to 6.3.0 by @​dependabot[bot] in SciTools/workflows#197

Full Changelog: SciTools/workflows@2026.06.0...2026.07.0

Commits

• 7c41342 Automated release for version "2026.07.1"
• 65aaa28 Bump actions/checkout from 6.0.2 to 7.0.0 (#196)
• 460279e Automated release for version "2026.07.0"
• 2b9aafa Bump actions/setup-python from 6.2.0 to 6.3.0 (#197)
• See full diff in compare view

Updates scitools/workflows/.github/workflows/ci-template-check.yml from 2026.06.0 to 2026.07.1

Release notes

Sourced from scitools/workflows/.github/workflows/ci-template-check.yml's releases.

2026.07.1

What's Changed

• Bump actions/checkout from 6.0.2 to 7.0.0 by @​dependabot[bot] in SciTools/workflows#196

Full Changelog: SciTools/workflows@2026.07.0...2026.07.1

2026.07.0

What's Changed

• Bump actions/setup-python from 6.2.0 to 6.3.0 by @​dependabot[bot] in SciTools/workflows#197

Full Changelog: SciTools/workflows@2026.06.0...2026.07.0

Commits

• 7c41342 Automated release for version "2026.07.1"
• 65aaa28 Bump actions/checkout from 6.0.2 to 7.0.0 (#196)
• 460279e Automated release for version "2026.07.0"
• 2b9aafa Bump actions/setup-python from 6.2.0 to 6.3.0 (#197)
• See full diff in compare view

Updates pypa/gh-action-pypi-publish from 1.14.0 to 1.14.2

Release notes

Sourced from pypa/gh-action-pypi-publish's releases.

v1.14.2

🛠️ Urgh… Another release!? Again? Explain yourself!

Looking at the diff, you'll only witness updates across the dependency tree. That's it! It's not a security fix or anything like that even, no. But you'll want this update.

[!tip] So what most people will find useful is @​takluyver💰's update of Twine to v7 that we use internally (#416). This version will let them upload their sdists and wheels containing core packaging metadata v2.5 to (Test)PyPI.

🧐 Tell me why..

TL;DR non-pure-python projects with C-extensions tend to have dozens (sometimes hundreds) wheels to upload to PyPI per release. They are often quite big and take time to transfer over the network. People started noticing problems and coming up with DIY sharding workarounds like aio-libs/aiohttp#13226 around July 23. On this date, projects with a good amount of bytes to publish would start getting timeouts 5 minutes after the PyPI publishing job begun. The same job that worked just fine before.

I had to start pinging upstream library and ecosystem people, on GitHub and privately, to start making sense of what was happening. Eventually, we collectively concluded that GitHub must've shortened the lifetime of their OIDC identity — it seems to have used to be 10 minutes long (at some point in the past) and is now 5 minutes, apparently. It's not documented clearly, and we have not been able to get any clarity by attempting to contact GitHub through private channels, using personal connections.

Over the course of investigation, @​facutuesca💰 found and fixed a related underlying cache invalidation bug in sigstore/sigstore-python#1838, which he then coordinated propagation through the dependency chain updates in sigstore-python, pypi-attestations, gh-action-pypi-publish and gh-action-sigstore-python.

Mike's also discovered that Sigstore's Rekor slowdown seems to have become the main contributing cause of the last week's incident. He's collected some data to support this claim: https://publishing-five-minute-timeout.tiiny.site.

🫶 New Contributors

• @​davidbrochart made their first contribution in #415
• @​takluyver made their first contribution in #416

🪞 Full Diff: pypa/gh-action-pypi-publish@v1.14.1...v1.14.2

🧔‍♂️ Release Manager: @​webknjaz 🇺🇦

🙏 Special Thanks to @​davidbrochart💰 and @​Dreamsorcerer💰 for turning my attention (in #415 and in private) to the newly surfaced corner case in GitHub's behavior that only affected a narrow category of projects while many others remained blissfully unaware. @​bdraco💰 came up with a DIY sharding workaround for aiohttp that served as a demo for other projects. @​miketheman💰 confirmed the Warehouse-side details. Also, @​jku💰 and @​woodruffw💰 helped work through, review and release the Sigstore ecosystem upstream libs.

💬 Discuss on Bluesky 🦋, on Mastodon 🐘 and [on GitHub][release discussion].

[![GH Sponsors badge]][GH Sponsors URL]

... (truncated)

Commits

• dc37677 Merge pull request #417 from trail-of-forks/ft/bump-deps
• 8b2f234 Bump pypi-attestations and sigstore
• 78b72db Merge pull request #416 from takluyver/twine-v7
• 92f4d2a Update twine to v7
• ba38be9 Merge pull request #408 from adisivaprasad/bump-setup-python-v6
• a6c5088 Bump actions/setup-python from v5.6.0 to v6.2.0
• See full diff in compare view

Updates actions/labeler from 6.1.0 to 7.0.0

Release notes

Sourced from actions/labeler's releases.

v7.0.0

What's Changed

Enhancements:

• Migrate to ESM and update dependencies by @​chiranjib-swain in actions/labeler#949

Full Changelog: actions/labeler@v6...v7.0.0

v6.2.0

What's Changed

Bug Fix

• Improve PR number validation and warning messages in input handling by @​chiranjib-swain in actions/labeler#939

Dependency Updates

• Bump js-yaml to 4.2.0, apply npm audit fix, and add undici override by @​dependabot in actions/labeler#943
• Bump @​typescript-eslint/eslint-plugin from 8.59.1 to 8.61.1 by @​dependabot in actions/labeler#942

Full Changelog: actions/labeler@v6.1.0...v6.2.0

Commits

• bf12e9b feat: migrate to ESM and update dependencies (#949)
• b8dd2d9 Bump @​typescript-eslint/eslint-plugin from 8.59.1 to 8.61.1 (#942)
• 53affe8 Bump js-yaml to 4.2.0, apply npm audit fix, and add undici override for 0 vul...
• f612d9a Fix: Improve PR number validation and warning messages in input handling (#939)
• See full diff in compare view

Updates scitools/workflows/.github/workflows/refresh-lockfiles.yml from 2026.06.0 to 2026.07.1

Release notes

Sourced from scitools/workflows/.github/workflows/refresh-lockfiles.yml's releases.

2026.07.1

What's Changed

• Bump actions/checkout from 6.0.2 to 7.0.0 by @​dependabot[bot] in SciTools/workflows#196

Full Changelog: SciTools/workflows@2026.07.0...2026.07.1

2026.07.0

What's Changed

• Bump actions/setup-python from 6.2.0 to 6.3.0 by @​dependabot[bot] in SciTools/workflows#197

Full Changelog: SciTools/workflows@2026.06.0...2026.07.0

Commits

• 7c41342 Automated release for version "2026.07.1"
• 65aaa28 Bump actions/checkout from 6.0.2 to 7.0.0 (#196)
• 460279e Automated release for version "2026.07.0"
• 2b9aafa Bump actions/setup-python from 6.2.0 to 6.3.0 (#197)
• See full diff in compare view

Updates actions/stale from 10.3.0 to 11.0.0

Release notes

Sourced from actions/stale's releases.

v11.0.0

What's Changed

Enhancement

• Migrate to ESM and update dependencies by @​chiranjib-swain in actions/stale#1350

Dependency Update

• Override brace-expansion to 5.0.8 to address 24 high-severity dependency vulnerabilities by @​dependabot in actions/stale#1351

Full Changelog: actions/stale@v10...v11.0.0

v10.4.0

What's Changed

Bug Fix

• Fixed only-issue-types validation by @​trueberryless in actions/stale#1338

Dependency Updates

• Bump undici to 6.27.0 via override, clean up stale license files, and version to 10.4.0. by @​dependabot in actions/stale#1342

New Contributors

• @​trueberryless made their first contribution in actions/stale#1338

Full Changelog: actions/stale@v10.3.0...v10.4.0

Commits

• 4391f3d Fix 24 high severity vulnerabilities by overriding brace-expansion to 5.0.8 (...
• eaf9131 refactor: update imports to use ES module syntax and improve test structure (...
• 1e223db Bump undici to 6.27.0 via override, clean up stale license files, and version...
• 9461cb1 fix: only-issue-types does not affect PRs (#1338)
• See full diff in compare view

[scitools-ci]

Templating

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