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Saloni-Bio-info/README.md

Hi, I'm Saloni 👋

I am second year (3rd semester) student of MSc Bioinformatics at Central University of South Bihar, Gaya

🧬 Bioinformatics Student | Genomics | Computational Biology

I'm interested in using computational approaches to understand biological data, with a focus on:

  • 🧬 Genomics & Transcriptomics
  • 🔬 Biomarker Discovery
  • 🤖 Machine Learning in Biology
  • 🧪 Multi-omics & Systems Biology

🛠️ Tools & Technologies

Languages: R, Python, Bash

Bioinformatics: FastQC, fastp, Cutadapt, BWA, SAMtools, BEDTools

Analysis: Differential Gene Expression, GSEA, RNA-seq, WES

Environment: Linux, Git, GitHub

🧪 Projects

Whole Exome Sequencing Analysis

NGS quality control and preprocessing workflow using FASTQ data.

cfRNA / TB Biomarker Analysis

Transcriptomic analysis focused on differential expression and biomarker discovery.

E. coli Infection Microarray Analysis

Differential gene expression analysis using limma, followed by functional enrichment and GSEA.

📚 Currently Learning

  • Advanced NGS analysis
  • Statistical methods for bioinformatics
  • Machine learning for biological datasets
  • Reproducible research workflows

🎯 Research Interests

Genomics • Transcriptomics • Biomarkers • Cancer Bioinformatics • Multi-omics • Systems Biology


⭐ I'm continuously building and documenting bioinformatics projects.

Pinned Loading

  1. Whole-Exome-Sequencing-Analysis Whole-Exome-Sequencing-Analysis Public

    A reproducible bioinformatics workflow for whole-exome sequencing data, covering quality control, preprocessing, BWA-MEM alignment, and alignment QC.

    Shell

  2. ecoli-infection-microarray-dge ecoli-infection-microarray-dge Public

    Differential expression and KEGG GSEA analysis of NEQC-normalized Illumina microarray data comparing E. coli infection vs mock samples, using limma and clusterProfiler.

    R

  3. GSE255074-cfRNA-TB-Biomarker-Analysis GSE255074-cfRNA-TB-Biomarker-Analysis Public

    DGE and GSEA analysis of TB biomarkers from cfRNA-seq data

    R