chore(deps)(deps): bump the dev-tools group with 2 updates

[dependabot]

Bumps the dev-tools group with 2 updates: ruff and mypy.

Updates ruff from 0.15.12 to 0.16.1

Release notes

Sourced from ruff's releases.

0.16.1

Release Notes

Released on 2026-07-30.

Preview features

• Add an option to opt out of human-readable names (#27160)
• [flake8-pytest-style] Make fixes safe by default and unsafe only when comments are present (PT018) (#27201)
• [pyupgrade] Skip fix when a defaulted TypeVar precedes a non-defaulted one (UP040, UP046, UP047) (#27133)
• [ruff] Fix false positive with unpacked arguments (RUF065) (#26959)

Bug fixes

• Bump gen-lsp-types to gracefully handle unknown enumeration values in LSP messages (#27230)
• [flake8-bugbear] Mark range as immutable (B008) (#27247)
• [flake8-comprehensions] NFKC-normalize keyword names in C408 fix (#26813)
• [flake8-return] Fix false positive when variable is read in finally clause (RET504) (#25441)
• [pydocstyle] Skip section detection inside RST directive bodies (D214, D405, D413) (#23635)
• [refurb] Parenthesize yield arguments in the FURB192 fix (#27192)

Rule changes

• [flake8-pytest-style] Mark PT022 fixes as unsafe (#26440)
• [refurb] Mark fixes that remove unknown separators as unsafe (FURB105) (#27200)

Server

• Fix indexing of excluded nested Ruff workspaces (#27303)
• Lint TOML files in the LSP (#26862)

Documentation

• Cover pycon Markdown formatting (#27153)
• [flake8-bandit] Document TYPE_CHECKING exception (S101) (#27004)
• [flake8-import-conventions] Document that extend-aliases can override default aliases (#27191)
• [pylint] Add missing fix safety gotchas for non-augmented-assignment (PLR6104) (#27250)

Other changes

• Reduce syntax error noise by swallowing dedents like indents (#27170)
• Vendor latest annotate-snippets (#27033)

Contributors

• @​bxff
• @​anishgirianish
• @​Avasam
• @​epage
• @​LHMQ878

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.1

Released on 2026-07-30.

Preview features

• Add an option to opt out of human-readable names (#27160)
• [flake8-pytest-style] Make fixes safe by default and unsafe only when comments are present (PT018) (#27201)
• [pyupgrade] Skip fix when a defaulted TypeVar precedes a non-defaulted one (UP040, UP046, UP047) (#27133)
• [ruff] Fix false positive with unpacked arguments (RUF065) (#26959)

Bug fixes

• Bump gen-lsp-types to gracefully handle unknown enumeration values in LSP messages (#27230)
• [flake8-bugbear] Mark range as immutable (B008) (#27247)
• [flake8-comprehensions] NFKC-normalize keyword names in C408 fix (#26813)
• [flake8-return] Fix false positive when variable is read in finally clause (RET504) (#25441)
• [pydocstyle] Skip section detection inside RST directive bodies (D214, D405, D413) (#23635)
• [refurb] Parenthesize yield arguments in the FURB192 fix (#27192)

Rule changes

• [flake8-pytest-style] Mark PT022 fixes as unsafe (#26440)
• [refurb] Mark fixes that remove unknown separators as unsafe (FURB105) (#27200)

Server

• Fix indexing of excluded nested Ruff workspaces (#27303)
• Lint TOML files in the LSP (#26862)

Documentation

• Cover pycon Markdown formatting (#27153)
• [flake8-bandit] Document TYPE_CHECKING exception (S101) (#27004)
• [flake8-import-conventions] Document that extend-aliases can override default aliases (#27191)
• [pylint] Add missing fix safety gotchas for non-augmented-assignment (PLR6104) (#27250)

Other changes

• Reduce syntax error noise by swallowing dedents like indents (#27170)
• Vendor latest annotate-snippets (#27033)

Contributors

• @​bxff
• @​anishgirianish
• @​Avasam
• @​epage
• @​LHMQ878
• @​MichaReiser

... (truncated)

Commits

• 80790b3 Bump 0.16.1 (#27330)
• 63830f3 [ty] Borrow from constraint set storage less often (#27328)
• f40dca9 [ty] Preserve forwarded expanded-variadic diagnostic sources (#27266)
• 0d80497 Lint TOML files in the LSP (#26862)
• d91586b Update prek dependencies (#27293)
• 7da4b8b [ty] Respect bounds and constraints in generic materializations (#27228)
• b20daf7 [ty] refactor: add helper function to send partial results (#27249)
• 4d4c8fa [ty] Emit diagnostic when specializing a non-generic class (#26883)
• 7c3e2db [ty] Fix enum class container assignability (#27318)
• d5ef97f [flake8-return] Fix false positive when variable is read in finally claus...
• Additional commits viewable in compare view

Updates mypy from 1.14.0 to 2.3.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next Release

Packaging changes

• No longer provide mypyc-accelerated wheels for macOS x86_64 [mypyc-wheels #119](mypyc/mypy_mypyc-wheels#119)

Mypy 2.3

We've just uploaded mypy 2.3.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

The Upcoming Switch to the New Native Parser

We are planning to enable the new native parser (--native-parser) by default soon. We recommend that you test the native parser in your projects and report any issues in the mypy issue tracker.

Mypyc Free-threading Memory Safety

Free-threaded Python builds that don't have the GIL require additional synchronization primitives or lock-free algorithms to ensure memory safety when there are race conditions (for example, when a thread reads a list item while another thread writes the same list item concurrently). This release greatly improves memory safety of free threading.

List operations are now memory-safe on free threaded Python builds, even in the presence of race conditions. This has some performance cost. For list-heavy workloads, using librt.vecs.vec instead of list is often significantly faster, but note that vec is not (and likely won't be) fully memory safe, and the user is expected to avoid race conditions. The newly introduced librt.threading.Lock helps with this. Using variable-length tuples can also be more efficient than lists, since tuples are immutable and don't require expensive synchronization to ensure memory safety.

Instance attribute access is also (mostly) memory safe now on free-threaded builds in the presence of race conditions. We are planning to fix the remaining unsafe cases in a future release.

Full list of changes:

• Make attribute access memory safe on free-threaded builds (Jukka Lehtosalo, PR 21705)
• Fix unsafe borrowing of instance attributes with free-threading (Jukka Lehtosalo, PR 21688)
• Make list get/set item more memory safe on free-threaded builds (Jukka Lehtosalo, PR 21683)
• Don't borrow list items on free-threaded builds (Jukka Lehtosalo, PR 21679)
• Make multiple assignment from list memory-safe on free-threaded builds (Jukka Lehtosalo, PR 21684)

... (truncated)

Commits

• 8aabf84 Drop +dev from version
• 4d8ad2a Update changelog for 2.3 release (#21728)
• 2c21546 [mypyc] Update documentation of race conditions under free threading (#21726)
• a9f62a3 [mypyc] Make attribute access memory safe on free-threaded builds (#21705)
• 0faa413 Use PYODIDE environment variable for Emscripten cross-compilation detection...
• 3d75cdb [mypyc] Borrow final attributes more aggressively (#21702)
• 24c237d [mypyc] Improve documentation of Final (#21713)
• b5be217 [mypyc] Update free threading Python compatibility docs (#21711)
• cbcb51a Narrow for frozendict membership check (#21709)
• af2bc0f Sync typeshed (#21707)
• Additional commits viewable in compare view

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[github-actions]

⚠️ Large PR Warning
Reviewable lines changed: 460
Warning threshold: 300 lines
Consider splitting for easier review

📋 Best Practices for Large Changes

1. Refactoring + Features: Separate into 2 PRs
2. Multiple Features: One PR per feature
3. Database + Code: Separate migration from logic
4. Generated Code: Exclude it from reviewable-size accounting

---

✅ This PR passes the blocking limit but is larger than recommended.

[github-actions]

Dependency Review

The following issues were found:

• ✅ 0 vulnerable package(s)
• ❌ 1 package(s) with incompatible licenses
• ✅ 0 package(s) with invalid SPDX license definitions
• ✅ 0 package(s) with unknown licenses.

See the Details below.

License Issues

poetry.lock

Package	Version	License	Issue Type
mypy	2.3.0	MIT AND Python-2.0 AND Python-2.0.1 AND BSD-2-Clause AND MIT AND Python-2.0 AND Python-2.0.1 AND BSD-2-Clause	Incompatible License

Allowed Licenses: MIT, Apache-2.0, BSD-3-Clause, BSD-2-Clause, ISC

OpenSSF Scorecard

Package	Version	Score	Details
pip/ast-serialize	0.8.0	Unknown	Unknown
pip/librt	0.15.0	Unknown	Unknown
pip/mypy	2.3.0	Unknown	Unknown
pip/ruff	0.16.1	Unknown	Unknown

Scanned Files

• poetry.lock

[github-actions]

L9 Audit Harness Report

• Generated: 2026-08-10T03:12:41.758572+00:00
• Repo root: /home/runner/work/Cognitive.Engine.Graphs/Cognitive.Engine.Graphs
• Overall result: ✅ PASSED
• Exit code: 0

Step Results

Step	Status	Exit Code	Notes
Architecture Audit	✅ Passed	0
Spec Coverage	✅ Passed	0
Contract Wiring	✅ Passed	0

Architecture Audit Findings

Severity	Count
🔴 CRITICAL	0
🟠 HIGH	0
🟡 MEDIUM	25
🔵 LOW	0

See artifacts/audit_report.md for full details.

Spec Coverage

• ✅ Implemented: 37
• ⚠️ Partial: 9
• ❌ Missing: 0
• Total features: 46

Category	Implemented	Partial	Missing	Total
gates	10	0	0	10
scoring	7	0	0	7
v1.1_node	2	0	0	2
v1.1_edge	2	0	0	2
v1.1_action	0	2	0	2
v1.1_scoring	1	1	0	2
action_handler	0	6	0	6
gds_algorithm	5	0	0	5
research_pattern	10	0	0	10

See artifacts/coverage_report.md for full details.

Next Steps

All checks passed. Safe to merge.

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud