Skip to content

Pull requests: PavlidisLab/Gemma

New pull request New
43 Open 303 Closed
43 Open 303 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Bump browserslist from 4.24.2 to 4.28.9 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1693 opened Sep 6, 2026 by dependabot Bot Loading…
Bump fast-uri from 3.0.3 to 3.1.7 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1692 opened Sep 3, 2026 by dependabot Bot Loading…
Bump nanoid from 3.3.7 to 3.3.18 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1691 opened Sep 1, 2026 by dependabot Bot Loading…
Bump postcss from 8.4.49 to 8.5.25 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1679 opened Jul 31, 2026 by dependabot Bot Loading…
Bump webpack-dev-server from 5.1.0 to 5.2.6 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1678 opened Jul 27, 2026 by dependabot Bot Loading…
Bump shell-quote from 1.8.1 to 1.10.0 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1675 opened Jul 20, 2026 by dependabot Bot Loading…
Bump websocket-driver from 0.7.4 to 0.7.5 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1674 opened Jul 15, 2026 by dependabot Bot Loading…
Bump launch-editor from 2.9.1 to 2.14.1 in /gemma-web/src/main/webapp dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code minor
#1665 opened Jun 18, 2026 by dependabot Bot Loading…
Allow DEA to be performed on a subset of the samples
#1627 opened Feb 24, 2026 by arteymix Contributor Loading…
@oganm
18
Allow using any supported identifier when linting ACLs
#1626 opened Feb 23, 2026 by arteymix Contributor Loading…
Make the experimental design non-nullable (fix #1618)
#1621 opened Feb 19, 2026 by arteymix Contributor Loading… 1.32.7
1
@arteymix
1
Add support for filtering ACLs using subqueries
#1617 opened Feb 15, 2026 by arteymix Contributor • Draft 1.33.0
1
Improvement for deployment script
#1614 opened Feb 14, 2026 by arteymix Contributor • Draft
2 tasks
@arteymix
6
hiding expression and qc windows when no data is present
#1607 opened Feb 5, 2026 by oganm Member Loading…
3
Improvements for ACL advice
#1600 opened Jan 28, 2026 by arteymix Contributor • Draft 1.33.0
1
Improve dataset splitting enhancement Enhance the code or user experience testing Feature or fix is being tested
#1589 opened Jan 14, 2026 by arteymix Contributor Loading… 1.32.7
1
2
Reapply "More improvements for data matrices"
#1579 opened Dec 17, 2025 by arteymix Contributor Loading…
1
Feature improve detection of experiment type
#1543 opened Oct 30, 2025 by arteymix Contributor • Draft
Add a basic data processing report enhancement Enhance the code or user experience
#1529 opened Oct 7, 2025 by arteymix Contributor • Draft 1.33.0
Prototype for loading cell-by-gene matrices low priority
#1525 opened Oct 6, 2025 by arteymix Contributor • Draft
3 tasks
1
Mark ExperimentalFactor as auto-generated
#1499 opened Aug 26, 2025 by arteymix Contributor • Draft 1.33.0
1
Bump org.apache.commons:commons-lang3 from 3.14.0 to 3.18.0 dependencies Pull requests that update a dependency file java Pull requests that update java code minor
#1480 opened Aug 5, 2025 by dependabot Bot Loading…
Bump commons-fileupload:commons-fileupload from 1.5 to 1.6.0 dependencies Pull requests that update a dependency file java Pull requests that update java code minor
#1478 opened Aug 5, 2025 by dependabot Bot Loading…
Single-cell batch correction
#1474 opened Aug 3, 2025 by arteymix Contributor • Draft
5 tasks
1
1
Add other accessions for ExpressionExperiment, BioAssay and BioMaterial
#1471 opened Aug 3, 2025 by arteymix Contributor • Draft 1.33.0
1
ProTip! Adding no:label will show everything without a label.