OpenProteinAI · markgeejw · Aug 25, 2026 · Jul 29, 2026 · Aug 3, 2026 · Aug 3, 2026
diff --git a/pixi.lock b/pixi.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -24,7 +24,7 @@ dependencies = [
   "sphinx-notfound-page>=1.1.0,<1.2.0",
   "sphinx-design>=0.6.1,<0.7",
   # autodoc
-  "openprotein-python>=0.16.0,<0.17.0",
+  "openprotein-python>=0.17.0,<0.18.0",
   "ipython>=9.8.0,<10",
   # nbsphinx needs ipywidgets to render notebooks containing widget output
   "ipywidgets>=8.1.0,<9",

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diff --git a/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-advanced-filters.png b/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-advanced-filters.png
diff --git a/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-antibody-view.png b/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-antibody-view.png
diff --git a/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-cluster.png b/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-cluster.png
diff --git a/.../_static/walkthroughs/antibody-hit-selection-ngs/ngs-dataset-assay-overview.png b/.../_static/walkthroughs/antibody-hit-selection-ngs/ngs-dataset-assay-overview.png
diff --git a/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-predict.png b/source/_static/walkthroughs/antibody-hit-selection-ngs/ngs-predict.png
diff --git a/source/python-api/api-reference/fold.rst b/source/python-api/api-reference/fold.rst
@@ -13,12 +13,15 @@ Interface
    :undoc-members:
 
 
-Models 
+Models
 ------
 
 .. autoclass:: openprotein.fold.ProtenixModel
    :members:
 
+.. autoclass:: openprotein.fold.ProtenixV2Model
+   :members:
+
 .. autoclass:: openprotein.fold.Boltz2Model
    :members:
 
@@ -49,6 +52,9 @@ Models
 Results
 -------
 
+.. autoclass:: openprotein.fold.ProtenixConfidence
+   :members:
+
 .. autoclass:: openprotein.fold.ESMFold2Confidence
    :members:
 

diff --git a/source/walkthroughs/antibody-hit-selection-ngs.rst b/source/walkthroughs/antibody-hit-selection-ngs.rst
@@ -9,10 +9,9 @@ This recommended end-to-end workflow guides you through selecting antibody hits
 from NGS-derived libraries using the **Dataset Assay Details** page. Each step assumes 
 the previous step's output is in place.
 
-This walkthrough is task-oriented. For a detailed feature reference of the controls used below like Predict, Clustering, Advanced Filters, and the Antibody
-settings panel, see comprehensive guide at:doc:`/web-app/opmodels/dataset-assay`.
+This walkthrough is task-oriented. For a detailed feature reference of the controls used below, view the following pages: `predict withina a table <https://docs.openprotein.ai/web-app/poet/score-sequences.html>`, 'Clustering <https://docs.openprotein.ai/web-app/opmodels/cluster.html>`, and the `Antibody settings panel<https://docs.openprotein.ai/web-app/opmodels/antibody-annotations.html>`.
 
-.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/dataset-assay-overview.png
+.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/ngs-dataset-assay-overview.png
    :alt: Dataset Assay Details page overview, showing tabs, header chips, and action bar
 
 
@@ -46,6 +45,9 @@ On the **Dataset** tab, open the **Antibody** panel, then configure the followin
 
 You now have a fully annotated table view of the library.
 
+.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/ngs-antibody-view.png
+   :alt: open the antibody panel
+
 
 Reduce redundancy with Clustering
 =================================
@@ -63,6 +65,8 @@ downstream steps operate on diverse families.
 
 You now have a ``Cluster Number`` column.
 
+.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/ngs-cluster.png
+   :alt: view cluster column
 
 Pre-filter using NGS / antibody metadata
 ========================================
@@ -88,6 +92,8 @@ Open **Advanced Filters** from the Dataset tab and apply the following filters i
 Toggle **Show select column** if you want to see what got rejected instead of
 hiding it.
 
+.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/ngs-advanced-filters.png
+   :alt: view cluster column
 
 Score with Predict
 ======================
@@ -105,6 +111,9 @@ With the candidate set narrowed, run a model to rank within it.
 **Scale with parallel predictions**: You can run multiple predictions in parallel — for example, one for binding
 and one for developability. Each gets its own chip and its own column.
 
+.. figure:: /_static/walkthroughs/antibody-hit-selection-ngs/ngs-predict.png
+   :alt: view cluster column
+
 
 Combine signals
 ================