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ModelSEED

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  1. ModelSEEDDatabase ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    Python 71 45

  2. ModelSEEDpy ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    Python 31 19

  3. Model-SEED-core Model-SEED-core Public archive

    The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.

    Perl 21 9

  4. ModelSEED-UI ModelSEED-UI Public

    ModelSEED UI (beta)

    HTML 9 8

  5. PlantSEED PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    Perl 6 10

  6. ModelSeedApi ModelSeedApi Public

    Application Programming Interface to the Model Seed

    Perl 4 1

Repositories

Showing 10 of 54 repositories
  • ModelSEED-UI Public

    ModelSEED UI (beta)

    ModelSEED/ModelSEED-UI's past year of commit activity
    HTML 9 8 30 9 Updated Oct 30, 2026
  • anme-srb-community-nn Public

    Versioned proxy neural-network surrogates of an ANME-SRB syntrophic AOM community model (methane oxidation coupled to sulfate reduction), built with the Song et al. 2025 FBA->ANN method. Each version bundles its genome-scale model, training data, code, trained net, and docs.

    ModelSEED/anme-srb-community-nn's past year of commit activity
    Python 0 0 0 0 Updated Oct 29, 2026
  • PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    ModelSEED/PlantSEED's past year of commit activity
    Perl 6 10 13 0 Updated Oct 29, 2026
  • modelseed-api Public

    Modern REST API backend for the ModelSEED metabolic modeling platform

    ModelSEED/modelseed-api's past year of commit activity
    Python 2 MIT 0 0 7 Updated Oct 29, 2026
  • MicrobiomeNotebooks Public
    ModelSEED/MicrobiomeNotebooks's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 28, 2026
  • ModelSEEDTemplates Public
    ModelSEED/ModelSEEDTemplates's past year of commit activity
    Python 2 MIT 3 2 4 Updated Oct 27, 2026
  • MSCommunity Public

    A repository of FBA community modeling functions within the ModelSEED ecosystem

    ModelSEED/MSCommunity's past year of commit activity
    Python 0 MIT 1 0 1 Updated Oct 26, 2026
  • ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    ModelSEED/ModelSEEDDatabase's past year of commit activity
    Python 71 45 23 2 Updated Oct 6, 2026
  • editEscher Public

    A library for editing Escher Metabolic Network maps

    ModelSEED/editEscher's past year of commit activity
    Python 0 0 0 0 Updated Sep 23, 2026
  • KB-ModelSEEDReconstruction Public
    ModelSEED/KB-ModelSEEDReconstruction's past year of commit activity
    Python 3 MIT 1 0 0 Updated Jun 11, 2026
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