Share one masked-marginal engine across the masked models and score the leaderboard with the wild-type fill - #21

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Leo-T-Zang wants to merge 12 commits into

v0.2from

four-fill-scoring

Commits on Aug 19, 2026

Add a shared masked-marginal engine with four fill strategies
Leo-T-Zang
committed
bd2df3d
Let a merge entry name its prediction folder and column
Leo-T-Zang
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5e9928b
Score the masked models with the wild-type fill on the leaderboard
Leo-T-Zang
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75ddaad

Commits on Aug 20, 2026

Correct what performance_fitness.py reproduces
Leo-T-Zang
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ca3508a
List every AIDO.RNA checkpoint on the leaderboard itself
Leo-T-Zang
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b28e786
Say which rows analyze_fill_strategies.py reproduces
Leo-T-Zang
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b2b4be3
Report the signed Spearman in performance_fitness.py
Leo-T-Zang
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7a6250d
Pin the signed Spearman and correct the metric description
Leo-T-Zang
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fe86f36
Resolve the masked models to the fill the leaderboard publishes
Leo-T-Zang
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435ded8

Commits on Aug 21, 2026

Report AUC and MCC with their direction as well
Leo-T-Zang
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0e25e3e
Describe the AUC and MCC binarisation precisely
Leo-T-Zang
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db9964d
Fail loudly when the default paths cannot deliver what is published
Leo-T-Zang
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dd98ff3