Issues

• PCA behavior

  KwanLab/Autometa#367 · Filter by author chasemc opened on Nov 12, 2024
  3

• The Bash tutorial is missing a step

  KwanLab/Autometa#365 · Filter by author lyisrae1 opened on Oct 23, 2024
  1

• Error in AUTOMETA:TAXON_ASSIGNMENT:LCA:PREP_DBS

  buggood first issuenextflow
  KwanLab/Autometa#363 · Filter by author bindiyabajracharya opened on Jun 18, 2024
  5

• kingdoms does not need to be defined multiple times in workflows/autometa_flagged.sh

  KwanLab/Autometa#332 · Filter by author jason-c-kwan opened on Jul 19, 2023

• Look into using taxon result limited blastp instead of top-n limited

  enhancementnextflowpythonstretch
  KwanLab/Autometa#322 · Filter by author chasemc opened on Apr 5, 2023
  1

• Fix BLAST results protein to taxonomic accession assignment

  KwanLab/Autometa#317 · Filter by author chasemc opened on Mar 30, 2023
  1

• Change arg name --norm-output for autometa-kmers entrypoint

  KwanLab/Autometa#310 · Filter by author chasemc opened on Mar 16, 2023
  2

• Move unrelated files out of Nextflow pipeline directory

  KwanLab/Autometa#309 · Filter by author chasemc opened on Mar 14, 2023
  1

  

• Missing example data causes gdown script to fail

  buggood first issue
  KwanLab/Autometa#308 · Filter by author chasemc opened on Mar 14, 2023
  4

  

• Add helpful error message

  enhancementgood first issue
  KwanLab/Autometa#306 · Filter by author chasemc opened on Mar 14, 2023
  1

  

• Documentation needs edit

  documentationgood first issue
  KwanLab/Autometa#304 · Filter by author chasemc opened on Feb 24, 2023
  

• 🐍 Replace attrs with dataclasses

  good first issuepython
  KwanLab/Autometa#303 · Filter by author evanroyrees opened on Jan 4, 2023

• Replace prodigal subprocess with pyrodigal

  enhancementgood first issuestretch
  KwanLab/Autometa#301 · Filter by author evanroyrees opened on Dec 28, 2022

• error: archaea.markers.tsv not found

  help wanted
  KwanLab/Autometa#298 · Filter by author Valentin-Bio-zz opened on Dec 12, 2022
  2

• Running the test profile fails, unable to find docker image

  bug
  KwanLab/Autometa#291 · Filter by author chasemc opened on Sep 6, 2022

• 🐌 ➡️ 🐎 Optimize DBSCAN clustering method for genome binning

  enhancementstretch
  KwanLab/Autometa#287 · Filter by author evanroyrees opened on Aug 7, 2022

• Add threads for for bowtie2-build

  enhancementgood first issuenextflow
  KwanLab/Autometa#263 · Filter by author chasemc opened on Apr 18, 2022
  

• 🐛🪲 Prevent edge case where MAG completeness is incorrectly computed

  bug
  KwanLab/Autometa#255 · Filter by author evanroyrees opened on Apr 5, 2022

• Migrate documentation from reStructuredText to MyST Markdown

  documentationgood first issue
  KwanLab/Autometa#240 · Filter by author evanroyrees opened on Feb 18, 2022
  4

  

• Notes on how to upgrade to current nf-core standards

  enhancementnextflowstretch
  KwanLab/Autometa#226 · Filter by author chasemc opened on Jan 25, 2022
  1

• Add Jupyter notebook examples / autometa code snippets

  documentationgood first issue
  KwanLab/Autometa#214 · Filter by author evanroyrees opened on Jan 7, 2022

• Pipeline fails if number of splits is greater than number of input contigs

  enhancementgood first issuenextflow
  KwanLab/Autometa#205 · Filter by author chasemc opened on Dec 16, 2021
  2

• Split input fasta file, smartly

  enhancementgood first issue
  KwanLab/Autometa#193 · Filter by author chasemc opened on Oct 18, 2021

• Animations in methods documentation

  documentationenhancementstretch
  KwanLab/Autometa#172 · Filter by author evanroyrees opened on Jun 7, 2021
  8

• Create nextflow process to hmmpress marker hmms

  enhancementgood first issuenextflow
  KwanLab/Autometa#171 · Filter by author chasemc opened on Jun 3, 2021
  1