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Add option to specify number of threads for pipeline - #83

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berndbohmeier merged 3 commits into
mainfrom
multithreading
Jul 14, 2026
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Add option to specify number of threads for pipeline#83
berndbohmeier merged 3 commits into
mainfrom
multithreading

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The number of threads will be used for mapping and variant calling with delve.

Note: needs to wait for new version of delve with option to specify threads

The number of threads will be used for mapping and variant calling with
delve.
This version is needed to specify the number of threads
For our MVP panel we have 10 amplicons, so this allows the variant
calling to be parallized in a way that it should do roughly 2 rounds.
This also leaves some room if people run two sequencing experiments at
the same time. Maybe we should instead check the number of cores in the
future.
@berndbohmeier
berndbohmeier marked this pull request as ready for review June 22, 2026 11:07
@berndbohmeier
berndbohmeier merged commit 019aef0 into main Jul 14, 2026
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@berndbohmeier
berndbohmeier deleted the multithreading branch July 14, 2026 12:50
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