Skip to content

Update ontology registry and S3 deployment metadata - #122

Draft
cmungall wants to merge 1 commit into
mainfrom
agent/update-ontology-registry-and-deployment
Draft

Update ontology registry and S3 deployment metadata#122
cmungall wants to merge 1 commit into
mainfrom
agent/update-ontology-registry-and-deployment

Conversation

@cmungall

Copy link
Copy Markdown
Collaborator

Summary

  • register the SSBD ontology and its two prefix mappings
  • update the FMA and GARD download URLs to their maintained locations
  • set explicit gzip content type and cache-control metadata for S3 deployments
  • remove the obsolete database directory placeholder

Why

The previous FMA and GARD sources have moved, SSBD needs to be available through the non-OBO ontology registry, and deployed .db.gz artifacts should carry stable HTTP metadata for clients and caches.

Impact

Ontology builds can download FMA, GARD, and SSBD from their current sources. S3-hosted database archives will be served as gzip content with a one-day public cache lifetime.

Root cause

The registry and generated Makefile still referenced superseded download locations, SSBD had not yet been registered, and the S3 deployment commands did not set object metadata explicitly.

Validation

  • uv run pytest tests/test_builder/ (7 passed, 2 skipped)
  • focused YAML, prefix CSV, and generated Makefile consistency assertions
  • git diff --check origin/main...HEAD

@claude

claude Bot commented Aug 12, 2026

Copy link
Copy Markdown

Claude encountered an error —— View job


I'll analyze this and get back to you.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant