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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

69 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 64 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 70 17
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 101 47

Repositories

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Showing 10 of 73 repositories

oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2's past year of commit activity

Java 2 Apache-2.0 0 1 2 Updated Aug 27, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4's past year of commit activity

Java 101 Apache-2.0 47 38 15 Updated Aug 27, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI's past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 1 Updated Aug 27, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo's past year of commit activity

Python 64 15 159 (2 issues need help) 6 Updated Aug 26, 2026
owlmake Public

EBISPOT/owlmake's past year of commit activity

Rust 0 Apache-2.0 0 0 1 Updated Aug 26, 2026
cohort-ontology Public
A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

EBISPOT/cohort-ontology's past year of commit activity

Makefile 5 CC0-1.0 0 3 0 Updated Aug 26, 2026
horned-owl Public Forked from phillord/horned-owl

EBISPOT/horned-owl's past year of commit activity

Rust 0 LGPL-3.0 20 0 0 Updated Aug 26, 2026
whelk-rs Public Forked from INCATools/whelk-rs
Whelk is an OWL EL reasoner

EBISPOT/whelk-rs's past year of commit activity

Rust 0 MIT 9 0 0 Updated Aug 19, 2026
GWAS_Catalog-workshop Public archive
Training material for the GWAS Catalog REST API workshop

EBISPOT/GWAS_Catalog-workshop's past year of commit activity

Jupyter Notebook 13 4 0 1 Updated Aug 13, 2026
PEGASUS Public
Predicted effector gene standard

EBISPOT/PEGASUS's past year of commit activity

TypeScript 3 0 0 19 Updated Aug 11, 2026

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