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swap template coordinate space from yx to xy #98

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Merged
celefthe merged 1 commit into from
Jul 15, 2026
Merged

swap template coordinate space from yx to xy #98

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10 changes: 5 additions & 5 deletions src/mesoscopy/io.py
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Original file line number Diff line number Diff line change
Expand Up @@ -196,7 +196,7 @@ def _read_fiji_points(path: str) -> dict[str, tuple[float, float]]:
points = xmltodict.parse(fp.read())
points = OrderedDict(
{
point["@name"]: (float(point["@y"]), float(point["@x"]))
point["@name"]: (float(point["@x"]), float(point["@y"]))
for point in points["namedpointset"]["pointworld"]
}
)
Expand All @@ -215,7 +215,7 @@ def _read_csv_points(path: str) -> dict[str, tuple[float, float]]:
"""
with open(path) as fp:
csv_reader = csv.DictReader(fp)
points = OrderedDict({row["landmark"]: (float(row["y"]), float(row["x"])) for row in csv_reader})
points = OrderedDict({row["landmark"]: (float(row["x"]), float(row["y"])) for row in csv_reader})

return points

Expand All @@ -230,7 +230,7 @@ def write_points(path: str, points: dict[str, tuple[float, float]]) -> None:
if not path.endswith(".csv"):
path += ".csv"
with open(path, "w") as fp:
csv_writer = csv.DictWriter(fp, fieldnames=["landmark", "y", "x"])
csv_writer = csv.DictWriter(fp, fieldnames=["landmark", "x", "y"])
csv_writer.writeheader()
for landmark, (y, x) in points.items():
csv_writer.writerow({"landmark": landmark, "y": y, "x": x})
for landmark, (x, y) in points.items():
csv_writer.writerow({"landmark": landmark, "x": x, "y": y})
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