DavuluriLab
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DNABERT-Enhancer
DNABERT-Enhancer PublicA Finetuned model for Enhancer prediction and our generative Cumulative Enhancer Dataset
Python 12
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DeepVRegulome
DeepVRegulome PublicDeepVRegulome is an end‑to‑end framework for predicting the functional impact of small somatic variants in non‑coding regulatory regions (splice sites and transcription‑factor‑binding sites) using …
Jupyter Notebook 4
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DavuluriLab.github.io
DavuluriLab.github.io PublicThis is the official webpage for Prof. Ramana Davuluri lab at Stony Brook University
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DNABERT
DNABERT PublicForked from RVDavuluri/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Python
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Repositories
- DeepVRegulome Public
DeepVRegulome is an end‑to‑end framework for predicting the functional impact of small somatic variants in non‑coding regulatory regions (splice sites and transcription‑factor‑binding sites) using fine‑tuned DNABERT models.
- TransTEx_datasets Public Forked from pallavisurana1/TransTEx_datasets
TransTEx method application datasets
- DNABERT-Enhancer_Portal Public
- DNABERT-Enhancer Public
A Finetuned model for Enhancer prediction and our generative Cumulative Enhancer Dataset
- ExTraMapper-2023 Public Forked from mattobu83/ExTraMapper
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
- DavuluriLab.github.io Public
This is the official webpage for Prof. Ramana Davuluri lab at Stony Brook University
- TransTEx Public Forked from pallavisurana1/TransTEx
R package for TransTEx: Novel tissue-specificity scoring method for grouping human transcriptome in-to different expression groups
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