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Pull requests: DataBiosphere/azul

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Pull requests list

Backport: 23a23e9 & 83ef501 (#8046, #7955, PR #8058) hotfix [process] An PR with an urgent fix for prod partial [process] PR is does not completely resolve associated ticket
#8069 opened Jun 1, 2026 by achave11-ucsc Member Loading…
16 of 59 tasks
@hannes-ucsc @achave11-ucsc
2
Upgrade software dependencies 2026-05-25 (#8051) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component reqs [process] PR includes commit requiring ``make requirements``
#8065 opened May 30, 2026 by achave11-ucsc Member Loading…
27 of 91 tasks
1
@hannes-ucsc @achave11-ucsc
2
Tighten verification of access tokens (#7993) upgrade [process] PR includes commit requiring manual upgrade
#8064 opened May 30, 2026 by hannes-ucsc Member Loading… 100+
1
@hannes-ucsc
2
Restructure directory containing downloads from curl manifest by dataset (#7926)
#8056 opened May 27, 2026 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
3
Fix: DeferredTaskExecutor unit test fails on GitLab (#8048) deploy:gitlab [process] PR requires deploying `gitlab` component
#8054 opened May 27, 2026 by dsotirho-ucsc Contributor Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
4
Fix: Redundant implementations of file URLs and mirror URIs (#8042)
#8043 opened May 21, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
2
Fix: curl manifest futilely includes external LungMAP files (#8027) 3 reviews [process] Lead requested changes thrice
#8030 opened May 15, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
23
Expose access to mirrored MA files via /repository/files (#7931)
#8028 opened May 15, 2026 by nadove-ucsc Contributor Loading… 100+
1
@hannes-ucsc @nadove-ucsc
3
Cover query service with mypy (#6821) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7916 opened Apr 8, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
8
Add support for HCA tissue atlas (#7128) 4+ reviews [process] Lead requested changes four times or more reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7877 opened Mar 17, 2026 by dsotirho-ucsc Contributor Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
64
Fix: Manifest IT fails with pinned seed (#7835)
#7850 opened Mar 10, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
7
Use requester-pays for mirroring in AnVIL deployments (#7794)
#7806 opened Feb 25, 2026 by nadove-ucsc Contributor • Draft 100+
2
@nadove-ucsc
14
Fix: OpenSearch queries are huge (azul-private#316) 1 review [process] Lead requested changes once
#7775 opened Feb 12, 2026 by nadove-ucsc Contributor Loading… 100+
@nadove-ucsc
13
Fix: Eliminate uses of requests library (#7633) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7745 opened Feb 4, 2026 by achave11-ucsc Member Loading… 100+
1
@achave11-ucsc
42
OpenSearch queries include many redundant source IDs (#7644)
#7727 opened Jan 29, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
1
Fix: Accumulator overflow during aggregation (#6793) 1 review [process] Lead requested changes once API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
47
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
107
ProTip! What’s not been updated in a month: updated:<2026-05-01.