CultureBotAI · realmarcin · Jun 17, 2026 · Jun 17, 2026
diff --git a/data/traits/ecology/animal_pathogen.yaml b/data/traits/ecology/animal_pathogen.yaml
@@ -7,10 +7,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1004000
-synonyms:
-- synonym_text: animal pathogen
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1146/annurev.micro.62.081307.162938
   snippet: virulence factors
@@ -128,3 +124,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0002327×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/ecology/human_pathogen.yaml b/data/traits/ecology/human_pathogen.yaml
@@ -7,10 +7,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1004000
-synonyms:
-- synonym_text: human pathogen
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1146/annurev.micro.62.081307.162938
   snippet: virulence factors
@@ -123,3 +119,9 @@ curation_history:
   changes: Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0002327×2).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/ecology/plant_pathogen.yaml b/data/traits/ecology/plant_pathogen.yaml
@@ -7,10 +7,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1004000
-synonyms:
-- synonym_text: plant pathogen
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1146/annurev.phyto.43.040204.135923
   snippet: type III secretion
@@ -166,3 +162,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0002212×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/aerobic.yaml b/data/traits/environment/aerobic.yaml
@@ -15,9 +15,6 @@ synonyms:
 - synonym_text: aerobe
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: aerobic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: PMID:21413255
   snippet: aerobes require molecular oxygen as a terminal electron acceptor
@@ -140,3 +137,9 @@ curation_history:
   changes: Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0002502×2).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/aerotolerant.yaml b/data/traits/environment/aerotolerant.yaml
@@ -9,9 +9,6 @@ mapping_status: REVIEWED
 parent_traits:
 - METPO:1000601
 synonyms:
-- synonym_text: aerotolerant
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 - synonym_text: aerotolerant anaerobe
   synonym_type: RELATED_SYNONYM
   source: https://bio.libretexts.org/Courses/Ohio_State_University/Microbiology_Lab_SP25/05%3A_Lab_5/5.05%3A_Bacterial_Oxygen_Requirements
@@ -138,3 +135,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (biolink:has_part×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/anaerobic.yaml b/data/traits/environment/anaerobic.yaml
@@ -15,9 +15,6 @@ synonyms:
 - synonym_text: anaerobe
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: anaerobic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: PMID:21413255
   snippet: Anaerobes, on the other hand, cannot grow in the presence of oxygen
@@ -125,3 +122,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0002212×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/euryhaline.yaml b/data/traits/environment/euryhaline.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000629
-synonyms:
-- synonym_text: euryhaline
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.5928/kaiyou.14.337
   snippet: growing over a salinity range of 15%
@@ -179,3 +175,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (METPO:2000208×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/extremely_halophilic.yaml b/data/traits/environment/extremely_halophilic.yaml
@@ -13,9 +13,6 @@ synonyms:
 - synonym_text: extreme-halophilic
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: extremely halophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 created_by: Jed Dongjin Kim-Ozaeta
 evidence:
 - reference: PMID:11790755
@@ -135,3 +132,9 @@ curation_history:
   changes: Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv
     (METPO:1007720×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/facultative_psychrophilic.yaml b/data/traits/environment/facultative_psychrophilic.yaml
@@ -12,9 +12,6 @@ synonyms:
 - synonym_text: facultative psychrophile
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: facultative psychrophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 created_by: Anthea Guo
 evidence:
 - reference: DOI:10.1111/j.1574-6941.2009.00727.x
@@ -162,3 +159,9 @@ curation_history:
   changes: Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label
     fix; verified vs OAK).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/facultatively_acidophilic.yaml b/data/traits/environment/facultatively_acidophilic.yaml
@@ -12,9 +12,6 @@ synonyms:
 - synonym_text: facultative acidophile
   synonym_type: EXACT_SYNONYM
   source: metpo.owl
-- synonym_text: facultatively acidophilic
-  synonym_type: EXACT_SYNONYM
-  source: metpo.owl
 created_by: Jed Dongjin Kim-Ozaeta
 evidence:
 - reference: DOI:10.1099/ijs.0.066175-0
@@ -175,3 +172,9 @@ curation_history:
   changes: Overwrote 2 pH causal-node grounding(s) to corrected PATO CURIEs (phase-2;
     verified vs OAK).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/haloalkaliphilic.yaml b/data/traits/environment/haloalkaliphilic.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000629
-synonyms:
-- synonym_text: haloalkaliphilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: PMID:17203963
   snippet: aerobic, haloalkaliphilic archaeon Natronomonas pharaonis
@@ -145,3 +141,9 @@ curation_history:
   changes: Overwrote 2 causal-node grounding(s) to corrected CURIEs (phase-2 id-label
     fix; verified vs OAK).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/halophilic.yaml b/data/traits/environment/halophilic.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000629
-synonyms:
-- synonym_text: halophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: PMID:19329623
   snippet: Salinicoccus albus sp. nov., a halophilic bacterium from a salt mine
@@ -160,3 +156,9 @@ curation_history:
   changes: Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv
     (METPO:1007720×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/halotolerant.yaml b/data/traits/environment/halotolerant.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000629
-synonyms:
-- synonym_text: halotolerant
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1093/femsre/fuy009
   snippet: highly halotolerant representatives
@@ -168,3 +164,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (METPO:2000208×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/hyperthermophilic.yaml b/data/traits/environment/hyperthermophilic.yaml
@@ -12,9 +12,6 @@ synonyms:
 - synonym_text: extreme thermophilic
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: hyperthermophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1111/j.1574-6976.1996.tb00233.x
   snippet: optimal growth temperatures between 80°C and 110°C
@@ -166,3 +163,9 @@ curation_history:
   changes: Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label
     fix; verified vs OAK).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/mesophilic.yaml b/data/traits/environment/mesophilic.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000613
-synonyms:
-- synonym_text: mesophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1016/j.bpj.2013.06.029
   snippet: Escherichia coli, a mesophilic bacterium
@@ -156,3 +152,9 @@ curation_history:
   changes: 'Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum
     semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.'
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/microaerophilic.yaml b/data/traits/environment/microaerophilic.yaml
@@ -15,9 +15,6 @@ synonyms:
 - synonym_text: microaerophile
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: microaerophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: https://www.ncbi.nlm.nih.gov/books/NBK154539/
   snippet: require oxygen to survive but require its presence in lower concentrations
@@ -138,3 +135,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (RO:0000085×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/microaerotolerant.yaml b/data/traits/environment/microaerotolerant.yaml
@@ -8,10 +8,6 @@ term_kind: CLASS
 mapping_status: REVIEWED
 parent_traits:
 - METPO:1000601
-synonyms:
-- synonym_text: microaerotolerant
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 evidence:
 - reference: DOI:10.1016/j.biortech.2011.02.011
   snippet: microaerotolerant or aerotolerant anaerobes can survive
@@ -123,3 +119,9 @@ curation_history:
   changes: Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv
     (METPO:2007407×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/moderately_halophilic.yaml b/data/traits/environment/moderately_halophilic.yaml
@@ -12,9 +12,6 @@ synonyms:
 - synonym_text: moderate-halophilic
   synonym_type: RELATED_SYNONYM
   source: metpo.owl
-- synonym_text: moderately halophilic
-  synonym_type: RELATED_SYNONYM
-  source: metpo.owl
 created_by: Anthea Guo
 evidence:
 - reference: PMID:9758852
@@ -141,3 +138,9 @@ curation_history:
   changes: Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv
     (GO:0006970×1).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true
diff --git a/data/traits/environment/obligately_acidophilic.yaml b/data/traits/environment/obligately_acidophilic.yaml
@@ -12,9 +12,6 @@ synonyms:
 - synonym_text: obligate acidophile
   synonym_type: EXACT_SYNONYM
   source: metpo.owl
-- synonym_text: obligately acidophilic
-  synonym_type: EXACT_SYNONYM
-  source: metpo.owl
 created_by: Jed Dongjin Kim-Ozaeta
 evidence:
 - reference: DOI:10.3389/fmicb.2021.822229
@@ -172,3 +169,9 @@ curation_history:
   changes: Overwrote 1 pH causal-node grounding(s) to corrected PATO CURIEs (phase-2;
     verified vs OAK).
   llm_assisted: true
+- timestamp: '2026-06-17T04:09:43Z'
+  curator: claude
+  action: REMOVE_REDUNDANT_SYNONYM
+  changes: Removed 1 synonym(s) whose text duplicated the label (seeder redundancy;
+    no information lost).
+  llm_assisted: true